miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana (thale
cress)
Length = 169
Score = 238 bits (120), Expect = 2e-62
Identities = 146/159 (91%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcattactagctcatatatacactctcaccacaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactagctcatatatacactctcaccacaaatg 65
Query: 61 cgtgtatatatgcggaattttgtgatatagannnnnnnnnnnnntgagtgtgatgatatg 120
||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 66 cgtgtatatatgcggaattttgtgatatagatgtgtgtgtgcgttgagtgtgatgatatg 125
Query: 121 gatgagttagttcttcatgtgcccatcttcaccatcatg 159
|||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gatgagttagttcttcatgtgcccatcttcaccatcatg 164
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 224 bits (113), Expect = 3e-58
Identities = 146/160 (91%), Gaps = 1/160 (0%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcattactagctcatatatacactctcaccaca-aat 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6 caagatggagaagcagggcacgtgcattactagctcatatatacactctcaccacacaat 65
Query: 60 gcgtgtatatatgcggaattttgtgatatagannnnnnnnnnnnntgagtgtgatgatat 119
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 66 gcgtgtatatatgcggaattttgtgatatagatgtgtgtgtgtgttgagtgtgatgatat 125
Query: 120 ggatgagttagttcttcatgtgcccatcttcaccatcatg 159
||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ggatgagttagttcttcatgtgcccatcttcaccatcatg 165
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 220 bits (111), Expect = 4e-57
Identities = 146/161 (90%), Gaps = 2/161 (1%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcattactagctcatatatacactctcaccacaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactagctcatatatacactctcaccacaaatg 65
Query: 61 cgtgtatatatgcggaattttgtgatataga--nnnnnnnnnnnnntgagtgtgatgata 118
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 66 cgtgtatatatgcggaattttgtgatatagatgtgtgtgtgtgtgttgagtgtgatgata 125
Query: 119 tggatgagttagttcttcatgtgcccatcttcaccatcatg 159
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tggatgagttagttcttcatgtgcccatcttcaccatcatg 166
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 75.8 bits (38), Expect = 2e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcattactagctcat 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactagctcat 43
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 124 gagttagttcttcatgtgcccatcttcaccatcatg 159
||||| ||||||||||||||| ||||| ||||||||
Sbjct: 120 gagttggttcttcatgtgcccctcttccccatcatg 155
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcattactagct 35
|||||||||||||||||||||||||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactagct 40
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcattactagctcat 38
|||||||||||||||||||||||||||||||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactaactcat 43
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 122 atgagttagttcttcatgtgcccatcttcaccatcatg 159
||||||||||| ||||||||||||||||| ||||||||
Sbjct: 104 atgagttagtttttcatgtgcccatcttccccatcatg 141
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcattactagctcat 38
|||||||||||||||||||||||||||||||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactaactcat 43
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 122 atgagttagttcttcatgtgcccatcttcaccatcatg 159
||||||||||||||||||||||| ||||| ||||||||
Sbjct: 73 atgagttagttcttcatgtgcccgtcttccccatcatg 110
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcattactagctcat 38
|||||||||||||||||||||||||||||||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactaactcat 43
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 124 gagttagttcttcatgtgcccatcttcaccatcatg 159
|||||||||||||||||||| ||||| ||||||||
Sbjct: 117 gagttagttcttcatgtgcctgtcttccccatcatg 152
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcattactagctcat 38
|||||||||||||||||||||||||||||||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactaactcat 43
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 126 gttagttcttcatgtgcccatcttcaccatcatg 159
||||||||||||||||||| ||||| ||||||||
Sbjct: 86 gttagttcttcatgtgcccgtcttccccatcatg 119
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcattact 31
|||||||||||||||||||||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcattact 36
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcattactagctcat 38
|||||||||||||||||||||||||| ||||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatactaactcat 43
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 123 tgagttagttcttcatgtgcccatcttcaccatcatg 159
|||||||||||||||||||||| ||||| ||||||||
Sbjct: 112 tgagttagttcttcatgtgcccctcttccccatcatg 148
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 4 gatggagaagcagggcacgtgcattactagctcat 38
||||||||||||||||||||||| ||||| |||||
Sbjct: 1 gatggagaagcagggcacgtgcactactaactcat 35
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 gatggagaagcagggcacgtgcattac 30
|||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattac 35
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgca 26
||||||||||||||||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgca 31
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 123 tgagttagttcttcatgtgcccatcttcaccatcatg 159
||||||||| |||||||||||| ||||| ||||||||
Sbjct: 254 tgagttagtgcttcatgtgcccctcttccccatcatg 290
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgca 26
||||||||||||||||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgca 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 125 agttagttcttcatgtgcccatcttcaccatcatg 159
||||||| |||||||||||| ||||| ||||||||
Sbjct: 251 agttagtacttcatgtgcccctcttccccatcatg 285
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcattac 30
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcattac 30
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcattactag 33
||||||||||||||||||||||| ||||
Sbjct: 11 tggagaagcagggcacgtgcattcctag 38
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gatggagaagcagggcacgtgca 26
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gatggagaagcagggcacgtgca 26
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 gatggagaagcagggcacgtgc 25
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcat 27
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcat 27
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcat 27
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
