miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 180 bits (91), Expect = 3e-45
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 14 gctggatgcagaggtttatcgatcgattcttgcttttgtaaacaaaaataaatattcaca 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 gctggatgcagaggtttatcgatcgattcttgcttttgtaaacaaaaataaatattcaca 32
Query: 74 ggaattgatcgatgaaccgctgcctccagcg 104
|||||||||||||||||||||||||||||||
Sbjct: 31 ggaattgatcgatgaaccgctgcctccagcg 1
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 14 gctggatgcagaggtttatcgatcgattc 42
|||||||||||||||||||||||||||||
Sbjct: 91 gctggatgcagaggtttatcgatcgattc 63
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 67 attcacaggaattgatcgatgaaccgctgcctccag 102
|||| |||||| |||||||||||||||||||||||
Sbjct: 38 attcccaggaagagatcgatgaaccgctgcctccag 3
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 68 ttcacaggaattgatcgatgaaccgctgcctccagcg 104
|||||||||| |||||||||||||||||||||||||
Sbjct: 37 ttcacaggaagagatcgatgaaccgctgcctccagcg 1
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 14 gctggatgcagaggtttatcgatcgattcttgctttt 50
|||||||||||||||||||||||| |||| |||||||
Sbjct: 88 gctggatgcagaggtttatcgatctattcatgctttt 52
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 14 gctggatgcagaggtttatcgatcgattc 42
|||||||||||||||||||||||||||||
Sbjct: 96 gctggatgcagaggtttatcgatcgattc 68
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gatcgatgaaccgctgcctccag 102
|||||||||||||||||||||||
Sbjct: 25 gatcgatgaaccgctgcctccag 3
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 14 gctggatgcagaggtttatcgatcgattc 42
|||||||||||||||||||||||||||||
Sbjct: 132 gctggatgcagaggtttatcgatcgattc 104
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 14 gctggatgcagaggtttatcgatcgattcttg 45
|||||||||||||||||||||| |||||||||
Sbjct: 88 gctggatgcagaggtttatcgaccgattcttg 57
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||||||||||
Sbjct: 157 ctggatgcagaggtttatcgatcgattc 130
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcgattc 42
||||||||||||||||||||||||||||
Sbjct: 158 ctggatgcagaggtttatcgatcgattc 131
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 14 gctggatgcagaggtttatcgatcg 38
|||||||||||||||||||||||||
Sbjct: 91 gctggatgcagaggtttatcgatcg 67
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gatcgatgaaccgctgcctccag 102
|||||||||||||||||||||||
Sbjct: 25 gatcgatgaaccgctgcctccag 3
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 14 gctggatgcagaggtttatcgatcgattc 42
|||||||||||||||||||||| ||||||
Sbjct: 90 gctggatgcagaggtttatcgaccgattc 62
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 14 gctggatgcagaggtttatcgatcgattc 42
|||||||||||||||||||||| ||||||
Sbjct: 133 gctggatgcagaggtttatcgaccgattc 105
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcg 38
||||||||||||||||||||||||
Sbjct: 90 ctggatgcagaggtttatcgatcg 67
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gatcgatgaaccgctgcctccag 102
|||||||||||||||||||||||
Sbjct: 25 gatcgatgaaccgctgcctccag 3
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 ctggatgcagaggtttatcgatcgattc 42
||||||||||||| ||||||||||||||
Sbjct: 116 ctggatgcagaggcttatcgatcgattc 89
