miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 174 bits (88), Expect = 1e-43
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggttccatgctt 61
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggtttcatgctt 60
Query: 62 gaagctatgtgtgctcactctctatccgtcac 93
||||||||||||||||||||||||||||||||
Sbjct: 61 gaagctatgtgtgctcactctctatccgtcac 92
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggttccatgcttg 62
|||||||||||||||||||||||||||| ||||||||||| | | || ||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgactttcttgcatgctgaatggactcatgcttg 61
Query: 63 aagctatgtgtgctcact 80
||||||||||||||||||
Sbjct: 62 aagctatgtgtgctcact 79
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 71.9 bits (36), Expect = 1e-12
Identities = 85/99 (85%), Gaps = 8/99 (8%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggtggctttcttgca----tatttg---aaggttc 54
|||||||||||||||||||||||||||||| ||||||||| | |||| | ||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtgg-tttcttgcatgcttttttgattagggttt 59
Query: 55 catgcttgaagctatgtgtgctcactctctatccgtcac 93
|||||||||||||||||||||| ||||||| || |||||
Sbjct: 60 catgcttgaagctatgtgtgcttactctctctctgtcac 98
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 63.9 bits (32), Expect = 3e-10
Identities = 39/40 (97%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggtggctttcttgca 41
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt-gctttcttgca 39
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacatggtggctttcttgcat 42
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgcttttcttgcat 41
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 catgcttgaagctatgtgtgctcact 80
||||||||||||||||||||||||||
Sbjct: 64 catgcttgaagctatgtgtgctcact 89
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 78/92 (84%), Gaps = 10/92 (10%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggtggct-ttcttgcatatttgaaggttccatgct 60
|||||||||||||||||||||||||||| || ||||||||| || ||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt--ctgttcttgcat-------gggtccatgct 51
Query: 61 tgaagctatgtgtgctcactctctatccgtca 92
||||||| || |||||||||||||||| ||||
Sbjct: 52 tgaagctctgcgtgctcactctctatctgtca 83
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 40/43 (93%), Gaps = 3/43 (6%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggtggctttcttgcatat 44
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt---tttcttgcatat 40
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggtg 30
|||||||||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtg 29
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggt 29
||||||||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggt 29
||||||||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 62 gaagctatgtgtgctcactctctatccgtcac 93
|||||||||||||||||||||||||| |||||
Sbjct: 55 gaagctatgtgtgctcactctctatctgtcac 86
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 56 atgcttgaagctatgtgtgctcactctctatccgtcac 93
||||||||| ||||||||||| |||||||||| |||||
Sbjct: 58 atgcttgaaactatgtgtgcttactctctatctgtcac 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggtg 30
|||| ||||||||||||||||||||||||
Sbjct: 1 gtgatagaagagagtgagcacacatggtg 29
>RF00073;mir-156;AM467075.2/5013-4925 29760:Vitis vinifera
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 63/75 (84%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggttccatgctt 61
|||||||| |||||||||||| |||||| ||||||||| ||||| ||| ||||||
Sbjct: 1 gtgacagaggagagtgagcactcatggttcttttcttgca----tgaagtttctatgctt 56
Query: 62 gaagctatgtgtgct 76
|||||| ||||||||
Sbjct: 57 gaagctctgtgtgct 71
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggtggctttcttgcata 43
||||||||||||||||||||||| |||| | || ||||||||
Sbjct: 1 gtgacagaagagagtgagcacacgtggttgtttccttgcata 42
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 68/82 (82%), Gaps = 4/82 (4%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggttccatgcttg 62
|||||||||||||||||||| ||||| | ||||||||| || | |||||||||| |
Sbjct: 2 tgacagaagagagtgagcacccatggcgtttttcttgca----tggatgttccatgctcg 57
Query: 63 aagctatgtgtgctcactctct 84
||||| || |||||| ||||||
Sbjct: 58 aagctctgcgtgctctctctct 79
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 gacagaagagagtgagcacacatgg 28
|||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatgg 27
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggtggctttcttgcat 42
|||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacagggt-actttcttgcat 40
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 53 tccatgcttgaagctatgtgtgctcactctctatccgtcac 93
|||||||||||| || || |||||||||||||||| |||||
Sbjct: 45 tccatgcttgaaactttgcgtgctcactctctatctgtcac 85
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacatggtgg 31
||||||||||||||||||||||| |||||
Sbjct: 2 tgacagaagagagtgagcacacacggtgg 30
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacatggt 29
|||||||||||||||||||||| |||||
Sbjct: 1 gtgacagaagagagtgagcacatatggt 28
Score = 48.1 bits (24), Expect = 2e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 55 catgcttgaagctatgtgtgctcac-tctctatccgtcac 93
|||||||||||||||| |||||||| |||||||| |||||
Sbjct: 49 catgcttgaagctatgcgtgctcacttctctatctgtcac 88
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacatggtg 30
||||||||||||||||||||||| ||||
Sbjct: 2 tgacagaagagagtgagcacacacggtg 29
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacac 24
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacac 24
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacac 24
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacac 24
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABEU01000369.1/338030-338109
145481:Physcomitrella patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcaca 23
||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcaca 22
>RF00073;mir-156;ABEU01001319.1/101465-101387
145481:Physcomitrella patens subsp. patens
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcaca 23
||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcaca 22
