miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48258_ath-miRf11158-akr:pmrd
Length = 101
Score = 65.9 bits (33), Expect = 6e-12
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 10 ggtgtcgatcgacacattattggtgtcggtcgatactgtctgtttctgcagtatctgtgt 69
||||||||||||||| | |||||||||||||| |||||| ||||| ||| |||||
Sbjct: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcg 60
Query: 70 tcactggtatcgatcgacaccaagtagtgtcggtcgacact 110
| ||||| |||||||||||| || |||||||||||||||
Sbjct: 61 tggctggtgtcgatcgacacccagctgtgtcggtcgacact 101
>48068_ath-miRf10968-akr:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 2e-09
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 1 gactggtttggtgtcgatcgacacattattggtgtcggtcgatactgtctgtttctgcag 60
|||||| |||||||||||||||||| |||| ||| ||| || |||||| | |||| ||
Sbjct: 2 gactgggttggtgtcgatcgacacacaattgatgtaggttgacactgtcgggttctatag 61
Query: 61 tatctgtgttcactggtatcgatcgacac 89
| |||||||| ||||| |||||||||||
Sbjct: 62 tgtctgtgttggctggtgtcgatcgacac 90
>47455_ath-miRf10355-akr:pmrd
Length = 108
Score = 58.0 bits (29), Expect = 2e-09
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 1 gactggtttggtgtcgatcgacacattattggtgtcggtcgatactgtctgtttctgcag 60
|||||| |||||||||||||||||| |||| ||| ||| || |||||| | |||| ||
Sbjct: 7 gactgggttggtgtcgatcgacacacaattgatgtaggttgacactgtcgggttctatag 66
Query: 61 tatctgtgttcactggtatcgatcgacac 89
| |||||||| ||||| |||||||||||
Sbjct: 67 tgtctgtgttggctggtgtcgatcgacac 95
>47454_ath-miRf10354-akr:pmrd
Length = 108
Score = 58.0 bits (29), Expect = 2e-09
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 1 gactggtttggtgtcgatcgacacattattggtgtcggtcgatactgtctgtttctgcag 60
|||||| |||||||||||||||||| |||| ||| ||| || |||||| | |||| ||
Sbjct: 7 gactgggttggtgtcgatcgacacacaattgatgtaggttgacactgtcgggttctatag 66
Query: 61 tatctgtgttcactggtatcgatcgacac 89
| |||||||| ||||| |||||||||||
Sbjct: 67 tgtctgtgttggctggtgtcgatcgacac 95
>47704_ath-miRf10604-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 73 ctggtatcgatcgacaccaagtagtgtcggt 103
||||| |||||||||||| ||||||||||||
Sbjct: 57 ctggtgtcgatcgacacccagtagtgtcggt 87
>47088_ath-miR855:pmrd
Length = 272
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 11 gtgtcgatcgacacattattggtgtcggtcga 42
||||||||||||||| | ||||||||| ||||
Sbjct: 64 gtgtcgatcgacacactcttggtgtcgatcga 95
>47022_ath-miR401:pmrd
Length = 250
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 11 gtgtcgatcgacacattattggtgtcggtcga 42
||||||| ||||||| | ||||||||||||||
Sbjct: 150 gtgtcgagcgacacactcttggtgtcggtcga 119
