miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47530_ath-miRf10430-akr:pmrd
Length = 169
Score = 168 bits (85), Expect = 8e-43
Identities = 115/125 (92%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgac 60
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct: 1 aagttgttcgtttgcctgtcgctggttcagcgaccaaaaatagcgataatcgccagcgat 60
Query: 61 cagcgatcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgatt 120
|||||| ||||||||||| ||||| |||||||||||||||||||||| |||| |||||||
Sbjct: 61 cagcgaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggttttagcgatt 120
Query: 121 agtcg 125
|||||
Sbjct: 121 agtcg 125
Score = 46.1 bits (23), Expect = 8e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 122 gtcgctgaatccagcgacatgcaaacgaacaactt 156
||||||||| ||||||||| |||||||||||||||
Sbjct: 34 gtcgctgaa-ccagcgacaggcaaacgaacaactt 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctgg 25
||||||||||||||| |||||||||
Sbjct: 169 aagttgttcgtttgcatgtcgctgg 145
>48043_ath-miRf10943-akr:pmrd
Length = 160
Score = 147 bits (74), Expect = 3e-36
Identities = 135/156 (86%), Gaps = 7/156 (4%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgac 60
||||||||||||||| ||||||||||||| ||| |||||||||||| ||||||||| |||
Sbjct: 155 aagttgttcgtttgcttgtcgctggttcagcgatcaaaagtagcgacagtcgccagggac 96
Query: 61 cagcgatcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgatt 120
|||||| || ||||||| ||| |||||||||||||||| ||||||| || ||
Sbjct: 95 cagcgaccgtaattttttgtcgttaaaatttttagcgattagtcgct-------gctttt 43
Query: 121 agtcgctgaatccagcgacatgcaaacgaacaactt 156
|||||||||||||||||||||||||||||||||||
Sbjct: 42 ggtcgctgaatccagcgacatgcaaacgaacaactt 7
Score = 54.0 bits (27), Expect = 3e-08
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctgg-ttcaacgaccaaaagtagcga 46
||||||||||||||| ||||||||| |||| |||||||||| |||||
Sbjct: 7 aagttgttcgtttgcatgtcgctggattcagcgaccaaaagcagcga 53
Score = 44.1 bits (22), Expect = 3e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 123 tcgctgaatccagcgacatgcaaacgaacaactt 156
|||||||| ||||||||| |||||||||||||||
Sbjct: 123 tcgctgaa-ccagcgacaagcaaacgaacaactt 155
>47788_ath-miRf10688-akr:pmrd
Length = 167
Score = 143 bits (72), Expect = 4e-35
Identities = 112/128 (87%), Gaps = 13/128 (10%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgac 60
|||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 162 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcga-------------c 116
Query: 61 cagcgatcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgatt 120
|||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 115 cagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgatt 56
Query: 121 agtcgctg 128
||||||||
Sbjct: 55 agtcgctg 48
Score = 54.0 bits (27), Expect = 3e-08
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctgg-ttcaacgaccaaaagtagcga 46
||||||||||||||| ||||||||| |||| |||||||||| |||||
Sbjct: 7 aagttgttcgtttgcatgtcgctggattcagcgaccaaaagcagcga 53
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 132 ccagcgacatgcaaacgaacaactt 156
||||||||| |||||||||||||||
Sbjct: 138 ccagcgacaggcaaacgaacaactt 162
>47461_ath-miRf10361-akr:pmrd
Length = 156
Score = 143 bits (72), Expect = 4e-35
Identities = 112/128 (87%), Gaps = 13/128 (10%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgac 60
||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcg-------------ac 47
Query: 61 cagcgatcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgatt 120
|||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 48 cagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgatt 107
Query: 121 agtcgctg 128
||||||||
Sbjct: 108 agtcgctg 115
Score = 54.0 bits (27), Expect = 3e-08
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctgg-ttcaacgaccaaaagtagcga 46
||||||||||||||| ||||||||| |||| |||||||||| |||||
Sbjct: 156 aagttgttcgtttgcatgtcgctggattcagcgaccaaaagcagcga 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 132 ccagcgacatgcaaacgaacaactt 156
||||||||| |||||||||||||||
Sbjct: 25 ccagcgacaggcaaacgaacaactt 1
>47789_ath-miRf10689-akr:pmrd
Length = 144
Score = 131 bits (66), Expect = 2e-31
Identities = 106/122 (86%), Gaps = 13/122 (10%)
Strand = Plus / Minus
Query: 7 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgaccagcga 66
|||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 144 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcga-------------ccagcga 98
Query: 67 tcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgattagtcgc 126
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 97 ccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgattagtcgc 38
Query: 127 tg 128
||
Sbjct: 37 tg 36
>47462_ath-miRf10362-akr:pmrd
Length = 144
Score = 131 bits (66), Expect = 2e-31
Identities = 106/122 (86%), Gaps = 13/122 (10%)
Strand = Plus / Plus
Query: 7 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgaccagcga 66
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcg-------------accagcga 47
Query: 67 tcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgattagtcgc 126
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 48 ccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgattagtcgc 107
Query: 127 tg 128
||
Sbjct: 108 tg 109
>48042_ath-miRf10942-akr:pmrd
Length = 137
Score = 123 bits (62), Expect = 4e-29
Identities = 123/144 (85%), Gaps = 7/144 (4%)
Strand = Plus / Minus
Query: 7 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgaccagcga 66
||||||||| ||||||||||||| ||| |||||||||||| ||||||||| |||||||||
Sbjct: 137 ttcgtttgcttgtcgctggttcagcgatcaaaagtagcgacagtcgccagggaccagcga 78
Query: 67 tcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgattagtcgc 126
|| ||||||| ||| |||||||||||||||| ||||||| || || |||||
Sbjct: 77 ccgtaattttttgtcgttaaaatttttagcgattagtcgct-------gcttttggtcgc 25
Query: 127 tgaatccagcgacatgcaaacgaa 150
||||||||||||||||||||||||
Sbjct: 24 tgaatccagcgacatgcaaacgaa 1
>47790_ath-miRf10690-akr:pmrd
Length = 124
Score = 123 bits (62), Expect = 4e-29
Identities = 71/74 (95%)
Strand = Plus / Minus
Query: 55 agcgaccagcgatcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttca 114
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 99 agcgaccagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttca 40
Query: 115 gcgattagtcgctg 128
||||||||||||||
Sbjct: 39 gcgattagtcgctg 26
>47463_ath-miRf10363-akr:pmrd
Length = 122
Score = 123 bits (62), Expect = 4e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 55 agcgaccagcgatcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttca 114
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 25 agcgaccagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttca 84
Query: 115 gcgattagtcgctg 128
||||||||||||||
Sbjct: 85 gcgattagtcgctg 98
>47113_ath-miRf10013-akr:pmrd
Length = 154
Score = 115 bits (58), Expect = 1e-26
Identities = 107/124 (86%), Gaps = 7/124 (5%)
Strand = Plus / Plus
Query: 5 tgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgaccagc 64
||||||||||||||||| ||||||| |||||||||||||||| ||| |||||||||
Sbjct: 1 tgttcgtttgcctgtcgttggttcagcgaccaaaagtagcgacagttgccagcgac---- 56
Query: 65 gatcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgattagtc 124
||||||||||| ||||| ||| |||||||||||| ||||| ||||||||| ||||||
Sbjct: 57 ---cgcaatttttggtcgctgaaaattttagcgatcattcgctggtttcagcgtttagtc 113
Query: 125 gctg 128
||||
Sbjct: 114 gctg 117
>48030_ath-miRf10930-akr:pmrd
Length = 150
Score = 111 bits (56), Expect = 2e-25
Identities = 105/122 (86%), Gaps = 7/122 (5%)
Strand = Plus / Minus
Query: 7 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgaccagcga 66
||||||||||||||| ||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 150 ttcgtttgcctgtcgttggttcagcgaccaaaagtagcgacagttgccagcgacc----- 96
Query: 67 tcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgattagtcgc 126
|||||||||| ||||| ||| |||||||||||| ||||| ||||||||| ||||||||
Sbjct: 95 --gcaatttttggtcgctgaaaattttagcgatcattcgctggtttcagcgtttagtcgc 38
Query: 127 tg 128
||
Sbjct: 37 tg 36
>47119_ath-miRf10019-akr:pmrd
Length = 115
Score = 99.6 bits (50), Expect = 6e-22
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 18 gtcgctggttcaacgaccaaaagtagcgagagtcgccagcgaccagcgatcgcaattttt 77
|||||||||||| ||| |||||||||||| ||||||||| ||||||||| || |||||||
Sbjct: 1 gtcgctggttcagcgatcaaaagtagcgacagtcgccagggaccagcgaccgtaattttt 60
Query: 78 gatcgctaaaatttttagcgatcagtcgct 107
||| |||||||||||||||| |||||||
Sbjct: 61 tgtcgttaaaatttttagcgattagtcgct 90
>47741_ath-miRf10641-akr:pmrd
Length = 164
Score = 91.7 bits (46), Expect = 1e-19
Identities = 107/128 (83%), Gaps = 7/128 (5%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgac 60
|||||||| |||||||| |||||| |||| |||| |||| |||||| |||||||||||||
Sbjct: 2 aagttgtttgtttgcctatcgctgattcagcgacaaaaattagcgacagtcgccagcgac 61
Query: 61 cagcgatcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgatt 120
||||||||| ||||| |||||||||||||||||||| | ||||||||||||
Sbjct: 62 t-------gcaatttttagtcgctgaaatttttagcgatcagtcgttggtttcagcgatt 114
Query: 121 agtcgctg 128
||| ||||
Sbjct: 115 agttgctg 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctgg 25
||||||||||||||| |||||||||
Sbjct: 163 aagttgttcgtttgcatgtcgctgg 139
