miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P22738|RL32_ARATH 60S ribosomal protein L3-2 OS=Arabidopsis
thaliana GN=ARP2 PE=2 SV=4
Length = 390
Score = 54.7 bits (130), Expect = 2e-07
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEKA 101
QTSRLAME I LKF+D +S GGHG FQTS+EKA
Sbjct: 349 QTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKA 381
>sp|P35684|RL3_ORYSJ 60S ribosomal protein L3 OS=Oryza sativa subsp.
japonica GN=RPL3 PE=2 SV=2
Length = 389
Score = 52.4 bits (124), Expect = 9e-07
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QTSRLA+E I LKF+DTSSK GHG FQT++EK
Sbjct: 349 QTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
>sp|P21531|RL3_RAT 60S ribosomal protein L3 OS=Rattus norvegicus
GN=Rpl3 PE=1 SV=3
Length = 403
Score = 48.1 bits (113), Expect = 2e-05
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QT R A+E I+LKF+DT+SK GHG FQT EEK
Sbjct: 354 QTKRRALEKIDLKFIDTTSKFGHGRFQTMEEK 385
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 OS=Mus musculus
GN=Rpl3 PE=2 SV=2
Length = 403
Score = 48.1 bits (113), Expect = 2e-05
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QT R A+E I+LKF+DT+SK GHG FQT EEK
Sbjct: 354 QTKRRALEKIDLKFIDTTSKFGHGRFQTMEEK 385
>sp|Q4R5Q0|RL3_MACFA 60S ribosomal protein L3 OS=Macaca fascicularis
GN=RPL3 PE=2 SV=3
Length = 403
Score = 48.1 bits (113), Expect = 2e-05
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QT R A+E I+LKF+DT+SK GHG FQT EEK
Sbjct: 354 QTKRRALEKIDLKFIDTTSKFGHGRFQTMEEK 385
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 OS=Homo sapiens
GN=RPL3 PE=1 SV=2
Length = 403
Score = 48.1 bits (113), Expect = 2e-05
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QT R A+E I+LKF+DT+SK GHG FQT EEK
Sbjct: 354 QTKRRALEKIDLKFIDTTSKFGHGRFQTMEEK 385
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3 OS=Caenorhabditis
elegans GN=rpl-3 PE=1 SV=1
Length = 401
Score = 47.8 bits (112), Expect = 2e-05
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QT R+A E INLK++DTSSK GHG FQT+ EK
Sbjct: 351 QTKRVAHEKINLKWIDTSSKTGHGRFQTTAEK 382
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 OS=Caenorhabditis
briggsae GN=rpl-3 PE=3 SV=2
Length = 401
Score = 47.8 bits (112), Expect = 2e-05
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QT R+A E INLK++DTSSK GHG FQT+ EK
Sbjct: 351 QTKRVAHEKINLKWIDTSSKTGHGRFQTTAEK 382
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3 OS=Bos taurus GN=RPL3
PE=2 SV=2
Length = 403
Score = 47.8 bits (112), Expect = 2e-05
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QT R A+E I+LKF+DT+SK GHG FQT EEK
Sbjct: 354 QTKRRALEKIDLKFIDTTSKFGHGRFQTVEEK 385
>sp|P17094|RL31_ARATH 60S ribosomal protein L3-1 OS=Arabidopsis
thaliana GN=ARP1 PE=2 SV=5
Length = 389
Score = 47.4 bits (111), Expect = 3e-05
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QTSRLA+E I LKF+DT+S GHG FQTS EK
Sbjct: 349 QTSRLALEEIKLKFIDTASIFGHGRFQTSLEK 380
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3 OS=Toxocara canis
GN=RPL3 PE=2 SV=2
Length = 402
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/32 (68%), Positives = 24/32 (75%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QT R A E INLK++DTSSK GHG FQT EK
Sbjct: 351 QTKRFAHEKINLKWIDTSSKFGHGRFQTHAEK 382
>sp|Q8NKF4|RL3_ASPFU 60S ribosomal protein L3 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=rpl3 PE=1 SV=2
Length = 392
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QTSR A E + LK++DTSSK GHG FQT EEK
Sbjct: 346 QTSRRATEKVELKWIDTSSKFGHGAFQTPEEK 377
>sp|P34113|RL3_DICDI 60S ribosomal protein L3 OS=Dictyostelium
discoideum GN=rpl3 PE=1 SV=2
Length = 398
Score = 45.1 bits (105), Expect = 1e-04
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +3
Query: 3 QTSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
QT R A+E I LKF+DTSSK GHG QT+E+K
Sbjct: 353 QTGRAALEKITLKFIDTSSKFGHGLHQTAEDK 384
>sp|Q3SZ10|RL3L_BOVIN 60S ribosomal protein L3-like OS=Bos taurus
GN=RPL3L PE=2 SV=3
Length = 407
Score = 44.7 bits (104), Expect = 2e-04
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +3
Query: 9 SRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
SR A+E I LKF+DT+SK GHG FQT++EK
Sbjct: 356 SRQALENIELKFIDTTSKFGHGRFQTAQEK 385
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like OS=Homo sapiens
GN=RPL3L PE=1 SV=3
Length = 407
Score = 44.3 bits (103), Expect = 2e-04
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +3
Query: 9 SRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
SR A+E I LKF+DT+SK GHG FQT++EK
Sbjct: 356 SRQAVENIELKFIDTTSKFGHGRFQTAQEK 385
>sp|O16797|RL3_DROME 60S ribosomal protein L3 OS=Drosophila
melanogaster GN=RpL3 PE=2 SV=3
Length = 416
Score = 43.5 bits (101), Expect = 4e-04
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +3
Query: 6 TSRLAMEVINLKFVDTSSKGGHGHFQTSEEK 98
T R A+E I LKF+DTSSK GHG FQT +K
Sbjct: 355 TKRSALEQIKLKFIDTSSKMGHGRFQTPADK 385
