miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48014_ath-miRf10914-akr:pmrd
Length = 136
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1 cattggatttggggctttgagattttctgggccatcgccacactttctctggccaatatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cattggatttggggctttgagattttctgggccatcgccacactttctctggccaatatt 61
Query: 61 gaaaggtgtggtcggcaacctttaacagatttgggttggatgggccagaaattctcaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gaaaggtgtggtcggcaacctttaacagatttgggttggatgggccagaaattctcaaag 121
Query: 121 ccccaaatcaaatg 134
||||||||||||||
Sbjct: 122 ccccaaatcaaatg 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 99 gatgggccagaaattctcaaagccccaaatcaaatg 134
||||| ||||||| ||||||||||||||||| ||||
Sbjct: 37 gatggcccagaaaatctcaaagccccaaatccaatg 2
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1 cattggatttggggctttgagattttctgggccatc 36
|||| ||||||||||||||||| ||||||| |||||
Sbjct: 135 catttgatttggggctttgagaatttctggcccatc 100
>47739_ath-miRf10639-akr:pmrd
Length = 138
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1 cattggatttggggctttgagattttctgggccatcgccacactttctctggccaatatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cattggatttggggctttgagattttctgggccatcgccacactttctctggccaatatt 77
Query: 61 gaaaggtgtggtcggcaacctttaacagatttgggttggatgggccagaaattctcaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 gaaaggtgtggtcggcaacctttaacagatttgggttggatgggccagaaattctcaaag 17
Query: 121 ccccaaatcaaatg 134
||||||||||||||
Sbjct: 16 ccccaaatcaaatg 3
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 cattggatttggggctttgagattttctgggccatc 36
|||| ||||||||||||||||| ||||||| |||||
Sbjct: 3 catttgatttggggctttgagaatttctggcccatc 38
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 99 gatgggccagaaattctcaaagccccaaatcaaatg 134
||||| ||||||| ||||||||||||||||| ||||
Sbjct: 101 gatggcccagaaaatctcaaagccccaaatccaatg 136
>47101_ath-miRf10001-akr:pmrd
Length = 124
Score = 246 bits (124), Expect = 4e-66
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 6 gatttggggctttgagattttctgggccatcgccacactttctctggccaatattgaaag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gatttggggctttgagattttctgggccatcgccacactttctctggccaatattgaaag 65
Query: 66 gtgtggtcggcaacctttaacagatttgggttggatgggccagaaattctcaaagcccca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gtgtggtcggcaacctttaacagatttgggttggatgggccagaaattctcaaagcccca 5
Query: 126 aatc 129
||||
Sbjct: 4 aatc 1
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 gatttggggctttgagattttctgggccatc 36
||||||||||||||||| ||||||| |||||
Sbjct: 1 gatttggggctttgagaatttctggcccatc 31
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 99 gatgggccagaaattctcaaagccccaaatc 129
||||| ||||||| |||||||||||||||||
Sbjct: 94 gatggcccagaaaatctcaaagccccaaatc 124
