miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47788_ath-miRf10688-akr:pmrd
Length = 167
Score = 309 bits (156), Expect = 3e-85
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgaccagcgaccgcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgaccagcgaccgcaat 103
Query: 61 ttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgattagtcgctgctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgattagtcgctgctttt 43
Query: 121 ggtcgctgaatccagcgacatgcaaacgaacaactt 156
||||||||||||||||||||||||||||||||||||
Sbjct: 42 ggtcgctgaatccagcgacatgcaaacgaacaactt 7
Score = 56.0 bits (28), Expect = 8e-09
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctgg-ttcaacgaccaaaagtagcgac 47
||||||||||||||| ||||||||| |||| |||||||||| ||||||
Sbjct: 7 aagttgttcgtttgcatgtcgctggattcagcgaccaaaagcagcgac 54
Score = 56.0 bits (28), Expect = 8e-09
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 109 gtcgctgcttttggtcgctgaatccagcgacatgcaaacgaacaactt 156
|||||| |||||||||| |||| ||||||||| |||||||||||||||
Sbjct: 116 gtcgctacttttggtcgttgaa-ccagcgacaggcaaacgaacaactt 162
>47789_ath-miRf10689-akr:pmrd
Length = 144
Score = 285 bits (144), Expect = 5e-78
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 7 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcgaccagcgaccgcaatttttga 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcgaccagcgaccgcaatttttga 85
Query: 67 tcgctgaaatttttagcgatcagtcgctggtttcagcgattagtcgctgcttttggtcgc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tcgctgaaatttttagcgatcagtcgctggtttcagcgattagtcgctgcttttggtcgc 25
Query: 127 tgaatccagcgacatgcaaacgaa 150
||||||||||||||||||||||||
Sbjct: 24 tgaatccagcgacatgcaaacgaa 1
>47462_ath-miRf10362-akr:pmrd
Length = 144
Score = 285 bits (144), Expect = 5e-78
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 7 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcgaccagcgaccgcaatttttga 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcgaccagcgaccgcaatttttga 60
Query: 67 tcgctgaaatttttagcgatcagtcgctggtttcagcgattagtcgctgcttttggtcgc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcgctgaaatttttagcgatcagtcgctggtttcagcgattagtcgctgcttttggtcgc 120
Query: 127 tgaatccagcgacatgcaaacgaa 150
||||||||||||||||||||||||
Sbjct: 121 tgaatccagcgacatgcaaacgaa 144
>47790_ath-miRf10690-akr:pmrd
Length = 124
Score = 246 bits (124), Expect = 4e-66
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 17 tgtcgctggttcaacgaccaaaagtagcgaccagcgaccgcaatttttgatcgctgaaat 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tgtcgctggttcaacgaccaaaagtagcgaccagcgaccgcaatttttgatcgctgaaat 65
Query: 77 ttttagcgatcagtcgctggtttcagcgattagtcgctgcttttggtcgctgaatccagc 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ttttagcgatcagtcgctggtttcagcgattagtcgctgcttttggtcgctgaatccagc 5
Query: 137 gaca 140
||||
Sbjct: 4 gaca 1
>47463_ath-miRf10363-akr:pmrd
Length = 122
Score = 242 bits (122), Expect = 6e-65
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 18 gtcgctggttcaacgaccaaaagtagcgaccagcgaccgcaatttttgatcgctgaaatt 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcgctggttcaacgaccaaaagtagcgaccagcgaccgcaatttttgatcgctgaaatt 60
Query: 78 tttagcgatcagtcgctggtttcagcgattagtcgctgcttttggtcgctgaatccagcg 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttagcgatcagtcgctggtttcagcgattagtcgctgcttttggtcgctgaatccagcg 120
Query: 138 ac 139
||
Sbjct: 121 ac 122
>47113_ath-miRf10013-akr:pmrd
Length = 154
Score = 196 bits (99), Expect = 3e-51
Identities = 140/154 (90%), Gaps = 6/154 (3%)
Strand = Plus / Plus
Query: 5 tgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgac------cagcgaccgca 58
||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct: 1 tgttcgtttgcctgtcgttggttcagcgaccaaaagtagcgacagttgccagcgaccgca 60
Query: 59 atttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgattagtcgctgctt 118
||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||| ||
Sbjct: 61 atttttggtcgctgaaaattttagcgatcattcgctggtttcagcgtttagtcgctgttt 120
Query: 119 ttggtcgctgaatccagcgacatgcaaacgaaca 152
|||||||||||||||||||||||| |||||||||
Sbjct: 121 ttggtcgctgaatccagcgacatgtaaacgaaca 154
Score = 48.1 bits (24), Expect = 2e-06
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 109 gtcgctgcttttggtcgctgaatccagcgacatgcaaacgaaca 152
|||||| ||||||||||||||| ||| ||||| |||||||||||
Sbjct: 43 gtcgctacttttggtcgctgaa-ccaacgacaggcaaacgaaca 1
>48030_ath-miRf10930-akr:pmrd
Length = 150
Score = 188 bits (95), Expect = 8e-49
Identities = 136/150 (90%), Gaps = 6/150 (4%)
Strand = Plus / Minus
Query: 7 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcgac------cagcgaccgcaat 60
||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct: 150 ttcgtttgcctgtcgttggttcagcgaccaaaagtagcgacagttgccagcgaccgcaat 91
Query: 61 ttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgattagtcgctgctttt 120
||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct: 90 ttttggtcgctgaaaattttagcgatcattcgctggtttcagcgtttagtcgctgttttt 31
Query: 121 ggtcgctgaatccagcgacatgcaaacgaa 150
|||||||||||||||||||||| |||||||
Sbjct: 30 ggtcgctgaatccagcgacatgtaaacgaa 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 109 gtcgctgcttttggtcgctgaatccagcgacatgcaaacgaa 150
|||||| ||||||||||||||| ||| ||||| |||||||||
Sbjct: 110 gtcgctacttttggtcgctgaa-ccaacgacaggcaaacgaa 150
>47741_ath-miRf10641-akr:pmrd
Length = 164
Score = 180 bits (91), Expect = 2e-46
Identities = 144/162 (88%), Gaps = 6/162 (3%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgac------cagcgac 54
|||||||| |||||||| |||||| |||| |||| |||| ||||||| |||||||
Sbjct: 2 aagttgtttgtttgcctatcgctgattcagcgacaaaaattagcgacagtcgccagcgac 61
Query: 55 cgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgattagtcgct 114
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 62 tgcaatttttagtcgctgaaatttttagcgatcagtcgttggtttcagcgattagttgct 121
Query: 115 gcttttggtcgctgaatccagcgacatgcaaacgaacaactt 156
|||||||||||||| |||||||||||||||||||||||||||
Sbjct: 122 gcttttggtcgctggatccagcgacatgcaaacgaacaactt 163
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctgg 25
||||||||||||||| |||||||||
Sbjct: 163 aagttgttcgtttgcatgtcgctgg 139
>47530_ath-miRf10430-akr:pmrd
Length = 169
Score = 176 bits (89), Expect = 3e-45
Identities = 147/169 (86%), Gaps = 13/169 (7%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgac------------- 47
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1 aagttgttcgtttgcctgtcgctggttcagcgaccaaaaatagcgataatcgccagcgat 60
Query: 48 cagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgatt 107
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 61 cagcgaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggttttagcgatt 120
Query: 108 agtcgctgcttttggtcgctgaatccagcgacatgcaaacgaacaactt 156
||||| | |||||| |||||| |||||||||||||||||||||||||||
Sbjct: 121 agtcgatacttttgatcgctggatccagcgacatgcaaacgaacaactt 169
Score = 56.0 bits (28), Expect = 8e-09
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 117 ttttggtcgctgaatccagcgacatgcaaacgaacaactt 156
|||||||||||||| ||||||||| |||||||||||||||
Sbjct: 39 ttttggtcgctgaa-ccagcgacaggcaaacgaacaactt 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctgg 25
||||||||||||||| |||||||||
Sbjct: 169 aagttgttcgtttgcatgtcgctgg 145
>47401_ath-miRf10301-akr:pmrd
Length = 156
Score = 143 bits (72), Expect = 4e-35
Identities = 112/128 (87%), Gaps = 13/128 (10%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcg-------------ac 47
||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgac 60
Query: 48 cagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgatt 107
|||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 61 cagcgatcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgatt 120
Query: 108 agtcgctg 115
||||||||
Sbjct: 121 agtcgctg 128
Score = 54.0 bits (27), Expect = 3e-08
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 110 tcgctgcttttggtcgctgaatccagcgacatgcaaacgaacaactt 156
||||| |||||||||| |||| ||||||||| |||||||||||||||
Sbjct: 46 tcgctacttttggtcgttgaa-ccagcgacaggcaaacgaacaactt 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctgg 25
||||||||||||||| |||||||||
Sbjct: 156 aagttgttcgtttgcatgtcgctgg 132
>48043_ath-miRf10943-akr:pmrd
Length = 160
Score = 111 bits (56), Expect = 2e-25
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 101 agcgattagtcgctgcttttggtcgctgaatccagcgacatgcaaacgaacaactt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 agcgattagtcgctgcttttggtcgctgaatccagcgacatgcaaacgaacaactt 7
Score = 69.9 bits (35), Expect = 5e-13
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgac 47
||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct: 155 aagttgttcgtttgcttgtcgctggttcagcgatcaaaagtagcgac 109
Score = 56.0 bits (28), Expect = 8e-09
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctgg-ttcaacgaccaaaagtagcgac 47
||||||||||||||| ||||||||| |||| |||||||||| ||||||
Sbjct: 7 aagttgttcgtttgcatgtcgctggattcagcgaccaaaagcagcgac 54
Score = 56.0 bits (28), Expect = 8e-09
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 109 gtcgctgcttttggtcgctgaatccagcgacatgcaaacgaacaactt 156
|||||| |||||| |||||||| ||||||||| |||||||||||||||
Sbjct: 109 gtcgctacttttgatcgctgaa-ccagcgacaagcaaacgaacaactt 155
>48042_ath-miRf10942-akr:pmrd
Length = 137
Score = 99.6 bits (50), Expect = 6e-22
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 101 agcgattagtcgctgcttttggtcgctgaatccagcgacatgcaaacgaa 150
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 agcgattagtcgctgcttttggtcgctgaatccagcgacatgcaaacgaa 1
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 7 ttcgtttgcctgtcgctggttcaacgaccaaaagtagcgac 47
||||||||| ||||||||||||| ||| |||||||||||||
Sbjct: 137 ttcgtttgcttgtcgctggttcagcgatcaaaagtagcgac 97
Score = 54.0 bits (27), Expect = 3e-08
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 45 gaccagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctg 95
|||||||||||| ||||||| ||| | |||||||||||||| ||||||||
Sbjct: 86 gaccagcgaccgtaattttttgtcgttaaaatttttagcgattagtcgctg 36
>47119_ath-miRf10019-akr:pmrd
Length = 115
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 101 agcgattagtcgctgcttttggtcgctgaatccagcgac 139
|||||||||||||||||||||||||||||||||||||||
Sbjct: 77 agcgattagtcgctgcttttggtcgctgaatccagcgac 115
Score = 54.0 bits (27), Expect = 3e-08
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 45 gaccagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctg 95
|||||||||||| ||||||| ||| | |||||||||||||| ||||||||
Sbjct: 41 gaccagcgaccgtaattttttgtcgttaaaatttttagcgattagtcgctg 91
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 18 gtcgctggttcaacgaccaaaagtagcgac 47
|||||||||||| ||| |||||||||||||
Sbjct: 1 gtcgctggttcagcgatcaaaagtagcgac 30
