miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47508_ath-miRf10408-akr:pmrd
Length = 102
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 9 tcgcaaatccctcgcaactgttgcgagggaagtactagaactgtagttgcgtgtgttttg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcaaatccctcgcaactgttgcgagggaagtactagaactgtagttgcgtgtgttttg 60
Query: 69 cgaggaaaacagttgctcgcaaaatttgcgagggaattgcga 110
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaggaaaacagttgctcgcaaaatttgcgagggaattgcga 102
>47840_ath-miRf10740-akr:pmrd
Length = 99
Score = 113 bits (57), Expect = 3e-26
Identities = 63/65 (96%)
Strand = Plus / Minus
Query: 1 gaaaagaatcgcaaatccctcgcaactgttgcgagggaagtactagaactgtagttgcgt 60
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 94 gaaaaaaatcgcaaatccctcgcaacagttgcgagggaagtactagaactgtagttgcgt 35
Query: 61 gtgtt 65
|||||
Sbjct: 34 gtgtt 30
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tccctcgcaactgttgcgaggga 38
|||||||||||||||||||||||
Sbjct: 57 tccctcgcaactgttgcgaggga 79
>47202_ath-miRf10102-akr:pmrd
Length = 96
Score = 83.8 bits (42), Expect = 3e-17
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 57 gcgtgtgttttgcgaggaaaacagttgctcgcaaaatttgcgagggaattgcga 110
||||||| |||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 43 gcgtgtgatttgcgaggaaaacagttcctcgcaaaaattgcgagggaattgcga 96
>47753_ath-miRf10653-akr:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 gcaaatccctcgcaactgttgcgagg 36
||||||||||||||||| ||||||||
Sbjct: 27 gcaaatccctcgcaacttttgcgagg 2
>47425_ath-miRf10325-akr:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gcaaatccctcgcaactgttgcgagg 36
||||||||||||||||| ||||||||
Sbjct: 86 gcaaatccctcgcaacttttgcgagg 111
>47114_ath-miRf10014-akr:pmrd
Length = 136
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 gcaaatccctcgcaactgttgcgagg 36
||||||||||||||||| ||||||||
Sbjct: 136 gcaaatccctcgcaacttttgcgagg 111
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 85 tcgcaaaatttgcgagggaattgc 108
||||||| ||||||||||||||||
Sbjct: 24 tcgcaaattttgcgagggaattgc 1
>48166_ath-miRf11066-akr:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 84 ctcgcaaaatttgcgagggaattgc 108
|||||||||||||||||||| ||||
Sbjct: 3 ctcgcaaaatttgcgagggatttgc 27
>47249_ath-miRf10149-akr:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 84 ctcgcaaaatttgcgagggaattgc 108
|||||||||||||||||||| ||||
Sbjct: 110 ctcgcaaaatttgcgagggatttgc 86
>48253_ath-miRf11153-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 gcaaatccctcgcaactgttgcga 34
||||||||||||||||| ||||||
Sbjct: 85 gcaaatccctcgcaacttttgcga 108
>47681_ath-miRf10581-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 gcaaatccctcgcaactgttgcga 34
||||||||||||||||| ||||||
Sbjct: 85 gcaaatccctcgcaacttttgcga 108
>47616_ath-miRf10516-akr:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 87 gcaaaatttgcgagggaatt 106
||||||||||||||||||||
Sbjct: 22 gcaaaatttgcgagggaatt 3
