miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47330_ath-miRf10230-akr:pmrd
Length = 112
Score = 143 bits (72), Expect = 3e-35
Identities = 102/112 (91%)
Strand = Plus / Plus
Query: 1 ggggttggtgtcgatcgacacctctgttgtgtcgctcgacaccaatcgcgtctacattat 60
|||||||||||||||||||||||||||||||| | |||||||||||||| ||| | || |
Sbjct: 1 ggggttggtgtcgatcgacacctctgttgtgttgttcgacaccaatcgcatctgcgttct 60
Query: 61 gctcccaaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 112
| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtcatgaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 112
>47554_ath-miRf10454-akr:pmrd
Length = 112
Score = 129 bits (65), Expect = 5e-31
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 4 gttggtgtcgatcgacacctctgttgtgtcgctcgacaccaatcgcgtctacattatgct 63
||||||||||||||||||||||||||||||| |||||||| || || | | | | ||||
Sbjct: 109 gttggtgtcgatcgacacctctgttgtgtcgttcgacacctattgcatttgcgtgctgct 50
Query: 64 cccaaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 112
||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 cccgatggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 1
>47224_ath-miRf10124-akr:pmrd
Length = 111
Score = 127 bits (64), Expect = 2e-30
Identities = 97/108 (89%)
Strand = Plus / Plus
Query: 4 gttggtgtcgatcgacacctctgttgtgtcgctcgacaccaatcgcgtctacattatgct 63
||||||||||||||||||||||||||||||| |||||||| || || | | | | ||||
Sbjct: 4 gttggtgtcgatcgacacctctgttgtgtcgttcgacacctattgcatttgcgtgctgct 63
Query: 64 cccaaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagcc 111
||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cccgatggtgtcgatcgacacccagttggtgtcgctcgacaccgagcc 111
>47267_ath-miRf10167-akr:pmrd
Length = 111
Score = 101 bits (51), Expect = 1e-22
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 3 ggttggtgtcgatcgacacctctgttgtgtcgctcgacaccaatcgcgtctacattatgc 62
|||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |
Sbjct: 110 ggttggtgtcgatcgacacctctgttgtgtcgttcgacaccaatcgtgtcttcattctaa 51
Query: 63 tcccaaaggtgtcgatcgacacc 85
|||| |||||||||||| |||||
Sbjct: 50 tcccgaaggtgtcgatctacacc 28
>48181_ath-miRf11081-akr:pmrd
Length = 104
Score = 97.6 bits (49), Expect = 2e-21
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 5 ttggtgtcgatcgacacctctgttgtgtcgctcgacaccaatcgcgtctacattatgctc 64
|||||||||||||||||||||||||||||| ||||||||||||| |||| |||| | ||
Sbjct: 1 ttggtgtcgatcgacacctctgttgtgtcgttcgacaccaatcgtgtcttcattctaatc 60
Query: 65 ccaaaggtgtcgatcgacacc 85
|| |||||||||||| |||||
Sbjct: 61 ccgaaggtgtcgatctacacc 81
>47692_ath-miRf10592-akr:pmrd
Length = 65
Score = 91.7 bits (46), Expect = 1e-19
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 55 cattatgctcccaaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 112
|||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2 cattctgctcccgaaggtgtcgatcgacacctagttggtgtcgctcgacaccgagccc 59
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 7 ggtgtcgatcgacacctctgttgtgtcgctcgacacc 43
||||||||||||||||| | |||||||||||||||
Sbjct: 17 ggtgtcgatcgacacctagttggtgtcgctcgacacc 53
>48109_ath-miRf11009-akr:pmrd
Length = 116
Score = 89.7 bits (45), Expect = 4e-19
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 4 gttggtgtcgatcgacacctctgttgtgtcgctcgacaccaatcgcgtctacattatgct 63
||||||||||||||||||||||||||||||| |||||||| || | ||| | ||||
Sbjct: 6 gttggtgtcgatcgacacctctgttgtgtcgttcgacaccgattgtatctgtgtgctgct 65
Query: 64 cccaaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagccc 112
| | | |||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 66 ctcgatggtgtcgatcaacacccagttggtgtcggtcgacaccaagccc 114
>47934_ath-miRf10834-akr:pmrd
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 4 gttggtgtcgatcgacacctctgttgtgtcgctcgacaccaatcgcgtctacattatgct 63
||||||||||||||||||||||||||||||| |||||||| || || || ||| ||||
Sbjct: 4 gttggtgtcgatcgacacctctgttgtgtcgttcgacaccgattgcatccgcatgctgct 63
Query: 64 cccaaaggtgtcgatcgacacc 85
||| | ||||||||||||||||
Sbjct: 64 cccgatggtgtcgatcgacacc 85
>48073_ath-miRf10973-akr:pmrd
Length = 84
Score = 77.8 bits (39), Expect = 2e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 15 tcgacacctctgttgtgtcgctcgacaccaatcgcgtctacattatgctcccaaaggtgt 74
|||||||||||||||||||| ||||||||||||||||| | | ||||||| | |||||
Sbjct: 1 tcgacacctctgttgtgtcggtcgacaccaatcgcgtcgtcgtgctgctcccgatggtgt 60
Query: 75 cgatcgacacc 85
|||||||||||
Sbjct: 61 cgatcgacacc 71
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 tggtgtcgatcgacacctctgttgtgtcg 34
|||||||||||||||||||||||||||||
Sbjct: 55 tggtgtcgatcgacacctctgttgtgtcg 83
>47360_ath-miRf10260-akr:pmrd
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 4 gttggtgtcgatcgacacctctgttgtgtcgctcgacaccaatcgcgtctacattatgct 63
|||||||||||||||||||||||||||||| || | ||| || || || | || ||||
Sbjct: 88 gttggtgtcgatcgacacctctgttgtgtcattcaataccgattgcatccgcgttctgct 29
Query: 64 cccaaaggtgtcgatcgacacc 85
||| ||||||||||||||||||
Sbjct: 28 cccgaaggtgtcgatcgacacc 7
>48258_ath-miRf11158-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 70 ggtgtcgatcgacacccagttggtgtcgctcgacac 105
||||||||||||||||| |||||||||| |||||||
Sbjct: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacac 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 70 ggtgtcgatcgacacccagttggtgtcgctcgacac 105
||||||||||||||||||| | |||||| |||||||
Sbjct: 66 ggtgtcgatcgacacccagct-gtgtcggtcgacac 100
>48231_ath-miRf11131-akr:pmrd
Length = 82
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 70 ggtgtcgatcgacacccagttggtgtcg 97
||||||||||||||||||||||||||||
Sbjct: 28 ggtgtcgatcgacacccagttggtgtcg 1
>47826_ath-miRf10726-akr:pmrd
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 71 gtgtcgatcgacacccagttggtgtcgctcgacacc 106
|||||||||||||||| |||||||||| || |||||
Sbjct: 67 gtgtcgatcgacaccctgttggtgtcgttcaacacc 32
>48068_ath-miRf10968-akr:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gggttggtgtcgatcgacac 21
||||||||||||||||||||
Sbjct: 6 gggttggtgtcgatcgacac 25
>47704_ath-miRf10604-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 ggtgtcgatcgacacccagt 89
||||||||||||||||||||
Sbjct: 59 ggtgtcgatcgacacccagt 78
>47455_ath-miRf10355-akr:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gggttggtgtcgatcgacac 21
||||||||||||||||||||
Sbjct: 11 gggttggtgtcgatcgacac 30
>47454_ath-miRf10354-akr:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gggttggtgtcgatcgacac 21
||||||||||||||||||||
Sbjct: 11 gggttggtgtcgatcgacac 30
>47088_ath-miR855:pmrd
Length = 272
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 71 gtgtcgatcgacacccagttggtgtcgctcgacacc 106
|||||||||||||| | ||||||||| ||||||||
Sbjct: 64 gtgtcgatcgacacactcttggtgtcgatcgacacc 99
