miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47187_ath-miRf10087-akr:pmrd
Length = 96
Score = 135 bits (68), Expect = 7e-33
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 2 tggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtg 61
|||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 1 tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 60
Query: 62 cagatttgagaagactctgaagctggcagtcgagta 97
| || | |||||||||||||||||||||||||||||
Sbjct: 61 cggaatggagaagactctgaagctggcagtcgagta 96
>47115_ath-miRf10015-akr:pmrd
Length = 98
Score = 127 bits (64), Expect = 2e-30
Identities = 88/96 (91%)
Strand = Plus / Plus
Query: 2 tggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtg 61
|||||||||| | ||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct: 2 tggtcgagtgttaagctggagtcttcttttcttccttgtgctcgagtgtctggttgagtg 61
Query: 62 cagatttgagaagactctgaagctggcagtcgagta 97
| || | |||||||||||||||||||||||||||||
Sbjct: 62 cggaatggagaagactctgaagctggcagtcgagta 97
>47645_ath-miRf10545-akr:pmrd
Length = 94
Score = 115 bits (58), Expect = 6e-27
Identities = 85/94 (90%)
Strand = Plus / Plus
Query: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
|||||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct: 1 ggtcgagtgattagttggagtcttcttttcttccttgtgctcgagtgtctggttgagtgc 60
Query: 63 agatttgagaagactctgaagctggcagtcgagt 96
| | ||||||||||||||||||||| ||||||
Sbjct: 61 gaaatggagaagactctgaagctggcaatcgagt 94
>47615_ath-miRf10515-akr:pmrd
Length = 90
Score = 115 bits (58), Expect = 6e-27
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 5 tcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgcag 64
||||||||||||||||||||||||| |||||||| |||| |||||||| ||||||||| |
Sbjct: 1 tcgagtgattagctggagtcttcttttcttccttgtgcttgagtgtctggttgagtgcgg 60
Query: 65 atttgagaagactctgaagctggcagtcga 94
| | ||||||||||||||||||||| ||||
Sbjct: 61 aatggagaagactctgaagctggcaatcga 90
>47494_ath-miRf10394-akr:pmrd
Length = 96
Score = 111 bits (56), Expect = 9e-26
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 2 tggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtg 61
|||||||||| | ||||||||||||||| |||||||| ||||||||||||| ||||| ||
Sbjct: 1 tggtcgagtggtaagctggagtcttcttttcttccttttgctcgagtgtctagttgaatg 60
Query: 62 cagatttgagaagactctgaagctggcagtcgagta 97
|||| | ||||||||| ||||||||||||||||||
Sbjct: 61 cagaatatagaagactccgaagctggcagtcgagta 96
>48180_ath-miRf11080-akr:pmrd
Length = 235
Score = 103 bits (52), Expect = 2e-23
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 2 tggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtg 61
||||||||||| |||||||||||||||| |||||||| |||| |||||||| ||||||||
Sbjct: 206 tggtcgagtgaatagctggagtcttcttttcttccttgtgcttgagtgtctggttgagtg 147
Query: 62 cagatttgagaagactctgaagct 85
| || | |||||||||||||||||
Sbjct: 146 cggaatggagaagactctgaagct 123
>47125_ath-miRf10025-akr:pmrd
Length = 94
Score = 101 bits (51), Expect = 9e-23
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
|||||||||| |||||||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct: 1 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtctagttgagtgc 60
Query: 63 agatttgagaagactctgaagct 85
|| | ||||||||||||||||
Sbjct: 61 ggaatgaagaagactctgaagct 83
>47725_ath-miRf10625-akr:pmrd
Length = 92
Score = 99.6 bits (50), Expect = 4e-22
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 4 gtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgca 63
||||||||| ||| |||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct: 4 gtcgagtgaatagatggagtcttcttttcttccttgtgctcgagtgtctagttgagtgcg 63
Query: 64 gatttgagaagactctgaagct 85
|| | |||||||||||||||||
Sbjct: 64 gaatggagaagactctgaagct 85
>47304_ath-miRf10204-akr:pmrd
Length = 132
Score = 87.7 bits (44), Expect = 1e-18
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 2 tggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtg 61
||||||||||| |||||||||||||||| |||||||| |||||| |||||| ||||||||
Sbjct: 20 tggtcgagtgaatagctggagtcttcttatcttccttgtgctcgtgtgtctggttgagtg 79
Query: 62 cagatttgagaagactctgaagct 85
| || | ||||| ||||||||||
Sbjct: 80 cggaatgaagaaggctctgaagct 103
>47186_ath-miRf10086-akr:pmrd
Length = 85
Score = 87.7 bits (44), Expect = 1e-18
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 2 tggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtg 61
|||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 26 tggtcgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 85
>47247_ath-miRf10147-akr:pmrd
Length = 94
Score = 85.7 bits (43), Expect = 5e-18
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
|||||||||| |||||||||||||||| |||||||| ||||||||||| | |||||||||
Sbjct: 1 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 60
Query: 63 agatttgagaagactctgaagct 85
|| | ||||| ||||||||||
Sbjct: 61 ggaatgaagaaggctctgaagct 83
>48099_ath-miRf10999-akr:pmrd
Length = 148
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 19 ggagtcttcttctcttccttatgctcgagtgtcttgttgagtgcagatttgagaagactc 78
||||||||||||||||||| |||||||||||||| ||||||||| || | ||||||||||
Sbjct: 46 ggagtcttcttctcttcctcatgctcgagtgtctggttgagtgcggaatcgagaagactc 105
Query: 79 tgaagc 84
| ||||
Sbjct: 106 taaagc 111
>47488_ath-miRf10388-akr:pmrd
Length = 148
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 19 ggagtcttcttctcttccttatgctcgagtgtcttgttgagtgcagatttgagaagactc 78
||||||||||||||||||| |||||||||||||| ||||||||| || | ||||||||||
Sbjct: 46 ggagtcttcttctcttcctcatgctcgagtgtctggttgagtgcggaatcgagaagactc 105
Query: 79 tgaagc 84
| ||||
Sbjct: 106 taaagc 111
>47372_ath-miRf10272-akr:pmrd
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
|||||||||| |||||||||||||||| || ||||| ||||||||||||| |||||||||
Sbjct: 30 ggtcgagtgaatagctggagtcttcttttcctccttgtgctcgagtgtctggttgagtgc 89
Query: 63 ag 64
||
Sbjct: 90 ag 91
>47123_ath-miRf10023-akr:pmrd
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
|||||||||| |||||||| ||||||| |||||||| ||||||||||||| |||||||||
Sbjct: 30 ggtcgagtgaatagctggactcttcttttcttccttgtgctcgagtgtctggttgagtgc 89
Query: 63 ag 64
||
Sbjct: 90 ag 91
>47369_ath-miRf10269-akr:pmrd
Length = 91
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
|||||||||| || ||||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct: 30 ggtcgagtgaataactggagtcttcttttcttccttgtgctcgagtgtctggttgagtgc 89
>47246_ath-miRf10146-akr:pmrd
Length = 91
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
|||||||||| |||||||||||||||| |||||||| ||||||||||| | |||||||||
Sbjct: 30 ggtcgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgc 89
>47888_ath-miRf10788-akr:pmrd
Length = 194
Score = 77.8 bits (39), Expect = 1e-15
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
|||||||||| || ||||||||||||| |||||||| ||||||||||||| ||| |||||
Sbjct: 161 ggtcgagtgaataactggagtcttcttttcttccttgtgctcgagtgtctggttaagtgc 102
Query: 63 agatttgagaagactctgaagct 85
|| | ||||| ||||||||||
Sbjct: 101 ggaatgaagaaggctctgaagct 79
>47253_ath-miRf10153-akr:pmrd
Length = 91
Score = 75.8 bits (38), Expect = 5e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct: 30 ggtcgagtgatatgctggagtcttctattcttccttgtgctcgagtgtctagttgagtgc 89
Query: 63 ag 64
||
Sbjct: 90 ag 91
>47242_ath-miRf10142-akr:pmrd
Length = 91
Score = 63.9 bits (32), Expect = 2e-11
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 3 ggtcgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgc 62
||||||||||| ||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 30 ggtcgagtgatgagccaaagtcttcttctcttcctgatgctcgaatgtctggttgagtgc 89
>48098_ath-miRf10998-akr:pmrd
Length = 140
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 19 ggagtcttcttctcttccttatgctcgagtgtcttgttgagtgcagatttgagaagactc 78
|||||||||||||||| || |||||||| ||||| ||||||||| || | ||||||| ||
Sbjct: 99 ggagtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatc 40
Query: 79 tgaagc 84
| ||||
Sbjct: 39 taaagc 34
>47818_ath-miRf10718-akr:pmrd
Length = 148
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 19 ggagtcttcttctcttccttatgctcgagtgtcttgttgagtgcagatttgagaagactc 78
|||||||||||||||| || |||||||| ||||| ||||||||| || | ||||||| ||
Sbjct: 46 ggagtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatc 105
Query: 79 tgaagc 84
| ||||
Sbjct: 106 taaagc 111
>47173_ath-miRf10073-akr:pmrd
Length = 148
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 19 ggagtcttcttctcttccttatgctcgagtgtcttgttgagtgcagatttgagaagactc 78
|||||||||||||||| || |||||||| ||||| ||||||||| || | ||||||| ||
Sbjct: 46 ggagtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatc 105
Query: 79 tgaagc 84
| ||||
Sbjct: 106 taaagc 111
>47172_ath-miRf10072-akr:pmrd
Length = 148
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 19 ggagtcttcttctcttccttatgctcgagtgtcttgttgagtgcagatttgagaagactc 78
|||||||||||||||| || |||||||| ||||| ||||||||| || | ||||||| ||
Sbjct: 46 ggagtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatc 105
Query: 79 tgaagc 84
| ||||
Sbjct: 106 taaagc 111
>47325_ath-miRf10225-akr:pmrd
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 24 cttcttctcttccttatgctcgagtgtcttgttgagtgc 62
|||||| |||||||| ||||||||||||| |||||||||
Sbjct: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgc 82
>47903_ath-miRf10803-akr:pmrd
Length = 149
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 54 gttgagtgcagatttgagaagactctgaagctggcagtcgagta 97
||||||||| || | |||||||| |||||||||||||||||||
Sbjct: 7 gttgagtgcggaatggagaagacagtgaagctggcagtcgagta 50