miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47844_ath-miRf10744-akr:pmrd
Length = 140
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 1 tgacacggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tgacacggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacc 72
Query: 61 cccctcttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 cccctcttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcctt 12
Query: 121 gtca 124
||||
Sbjct: 11 gtca 8
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 1 tgacacggaagcatagctccatatccttcaatggaggtgtggt 43
||||| |||||||||||| || ||||||||||||||||||||
Sbjct: 8 tgacaaggaagcatagcttcaggtccttcaatggaggtgtggt 50
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 82 accacacctccattgaaggacctgaagctatgcttccttgtca 124
|||||||||||||||||||| || |||||||||||| |||||
Sbjct: 89 accacacctccattgaaggatatggagctatgcttccgtgtca 131
>47066_ath-miR836:pmrd
Length = 337
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 tgacacggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tgacacggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacc 167
Query: 61 cccctcttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cccctcttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcctt 227
Query: 121 gtca 124
||||
Sbjct: 228 gtca 231
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 82 accacacctccattgaaggacctgaagctatgcttccttgtca 124
|||||||||||||||||||| || |||||||||||| |||||
Sbjct: 150 accacacctccattgaaggatatggagctatgcttccgtgtca 108
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1 tgacacggaagcatagctccatatccttcaatggaggtgtggt 43
||||| |||||||||||| || ||||||||||||||||||||
Sbjct: 231 tgacaaggaagcatagcttcaggtccttcaatggaggtgtggt 189
>48129_ath-miRf11029-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 5e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 7 ggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacccccctc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacccccctc 60
Query: 67 ttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcc 112
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 82 accacacctccattgaaggacctgaagctatgcttcc 118
|||||||||||||||||||| || ||||||||||||
Sbjct: 37 accacacctccattgaaggatatggagctatgcttcc 1
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 7 ggaagcatagctccatatccttcaatggaggtgtggt 43
|||||||||||| || ||||||||||||||||||||
Sbjct: 112 ggaagcatagcttcaggtccttcaatggaggtgtggt 76
>47845_ath-miRf10745-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 5e-59
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 7 ggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacccccctc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ggaagcatagctccatatccttcaatggaggtgtggtccttcaacaaaaatacccccctc 53
Query: 67 ttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ttgaaactctgtttcaccacacctccattgaaggacctgaagctatgcttcc 1
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 7 ggaagcatagctccatatccttcaatggaggtgtggt 43
|||||||||||| || ||||||||||||||||||||
Sbjct: 1 ggaagcatagcttcaggtccttcaatggaggtgtggt 37
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 accacacctccattgaaggacctgaagctatgcttcc 118
|||||||||||||||||||| || ||||||||||||
Sbjct: 76 accacacctccattgaaggatatggagctatgcttcc 112
