miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47788_ath-miRf10688-akr:pmrd
Length = 167
Score = 176 bits (89), Expect = 3e-45
Identities = 147/169 (86%), Gaps = 13/169 (7%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctggttcagcgaccaaaaatagcgataatcgccagcgat 60
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 162 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgac------------- 116
Query: 61 cagcgaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggttttagcgatt 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 115 cagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgatt 56
Query: 121 agtcgatacttttgatcgctggatccagcgacatgcaaacgaacaactt 169
||||| | |||||| |||||| |||||||||||||||||||||||||||
Sbjct: 55 agtcgctgcttttggtcgctgaatccagcgacatgcaaacgaacaactt 7
Score = 56.0 bits (28), Expect = 9e-09
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctgg-ttcagcgaccaaaa 39
||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 7 aagttgttcgtttgcatgtcgctggattcagcgaccaaaa 46
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 145 ccagcgacatgcaaacgaacaactt 169
||||||||| |||||||||||||||
Sbjct: 138 ccagcgacaggcaaacgaacaactt 162
>47461_ath-miRf10361-akr:pmrd
Length = 156
Score = 176 bits (89), Expect = 3e-45
Identities = 147/169 (86%), Gaps = 13/169 (7%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctggttcagcgaccaaaaatagcgataatcgccagcgat 60
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgac------------- 47
Query: 61 cagcgaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggttttagcgatt 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 48 cagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttcagcgatt 107
Query: 121 agtcgatacttttgatcgctggatccagcgacatgcaaacgaacaactt 169
||||| | |||||| |||||| |||||||||||||||||||||||||||
Sbjct: 108 agtcgctgcttttggtcgctgaatccagcgacatgcaaacgaacaactt 156
Score = 56.0 bits (28), Expect = 9e-09
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctgg-ttcagcgaccaaaa 39
||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 156 aagttgttcgtttgcatgtcgctggattcagcgaccaaaa 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 145 ccagcgacatgcaaacgaacaactt 169
||||||||| |||||||||||||||
Sbjct: 25 ccagcgacaggcaaacgaacaactt 1
>47401_ath-miRf10301-akr:pmrd
Length = 156
Score = 168 bits (85), Expect = 9e-43
Identities = 115/125 (92%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctggttcagcgaccaaaaatagcgataatcgccagcgat 60
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct: 1 aagttgttcgtttgcctgtcgctggttcaacgaccaaaagtagcgagagtcgccagcgac 60
Query: 61 cagcgaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggttttagcgatt 120
|||||| ||||||||||| ||||| |||||||||||||||||||||| |||| |||||||
Sbjct: 61 cagcgatcgcaatttttgatcgctaaaatttttagcgatcagtcgctagtttcagcgatt 120
Query: 121 agtcg 125
|||||
Sbjct: 121 agtcg 125
Score = 46.1 bits (23), Expect = 8e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctgg-ttcagcgac 34
||||||||||||||| ||||||||| |||||||||
Sbjct: 156 aagttgttcgtttgcatgtcgctggattcagcgac 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 145 ccagcgacatgcaaacgaacaactt 169
||||||||| |||||||||||||||
Sbjct: 25 ccagcgacaggcaaacgaacaactt 1
>47741_ath-miRf10641-akr:pmrd
Length = 164
Score = 165 bits (83), Expect = 1e-41
Identities = 147/169 (86%), Gaps = 7/169 (4%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctggttcagcgaccaaaaatagcgataatcgccagcgat 60
|||||||| |||||||| |||||| ||||||||| |||| |||||| | ||||||||||
Sbjct: 2 aagttgtttgtttgcctatcgctgattcagcgacaaaaattagcgacagtcgccagcga- 60
Query: 61 cagcgaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggttttagcgatt 120
| ||||||||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 61 ------ctgcaatttttagtcgctgaaatttttagcgatcagtcgttggtttcagcgatt 114
Query: 121 agtcgatacttttgatcgctggatccagcgacatgcaaacgaacaactt 169
||| | | |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 115 agttgctgcttttggtcgctggatccagcgacatgcaaacgaacaactt 163
Score = 48.1 bits (24), Expect = 2e-06
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctgg-ttcagcgaccaaaa 39
||||||||||||||| ||||||||| | ||||||||||||
Sbjct: 163 aagttgttcgtttgcatgtcgctggatccagcgaccaaaa 124
>47789_ath-miRf10689-akr:pmrd
Length = 144
Score = 161 bits (81), Expect = 2e-40
Identities = 102/109 (93%)
Strand = Plus / Minus
Query: 55 agcgatcagcgaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggtttta 114
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 109 agcgaccagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttca 50
Query: 115 gcgattagtcgatacttttgatcgctggatccagcgacatgcaaacgaa 163
||||||||||| | |||||| |||||| |||||||||||||||||||||
Sbjct: 49 gcgattagtcgctgcttttggtcgctgaatccagcgacatgcaaacgaa 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 7 ttcgtttgcctgtcgctgg-ttcagcgaccaaaa 39
||||||||| ||||||||| ||||||||||||||
Sbjct: 1 ttcgtttgcatgtcgctggattcagcgaccaaaa 34
>47462_ath-miRf10362-akr:pmrd
Length = 144
Score = 161 bits (81), Expect = 2e-40
Identities = 102/109 (93%)
Strand = Plus / Plus
Query: 55 agcgatcagcgaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggtttta 114
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 36 agcgaccagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttca 95
Query: 115 gcgattagtcgatacttttgatcgctggatccagcgacatgcaaacgaa 163
||||||||||| | |||||| |||||| |||||||||||||||||||||
Sbjct: 96 gcgattagtcgctgcttttggtcgctgaatccagcgacatgcaaacgaa 144
Score = 44.1 bits (22), Expect = 3e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 7 ttcgtttgcctgtcgctgg-ttcagcgaccaaaa 39
||||||||| ||||||||| ||||||||||||||
Sbjct: 144 ttcgtttgcatgtcgctggattcagcgaccaaaa 111
>47113_ath-miRf10013-akr:pmrd
Length = 154
Score = 149 bits (75), Expect = 8e-37
Identities = 139/161 (86%), Gaps = 7/161 (4%)
Strand = Plus / Plus
Query: 5 tgttcgtttgcctgtcgctggttcagcgaccaaaaatagcgataatcgccagcgatcagc 64
||||||||||||||||| ||||||||||||||||| |||||| | | ||||||
Sbjct: 1 tgttcgtttgcctgtcgttggttcagcgaccaaaagtagcgacagttgccagc------- 53
Query: 65 gaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggttttagcgattagtc 124
|||||||||||||||||||||||| |||||||||||| |||||||||| |||| ||||||
Sbjct: 54 gaccgcaatttttggtcgctgaaaattttagcgatcattcgctggtttcagcgtttagtc 113
Query: 125 gatacttttgatcgctggatccagcgacatgcaaacgaaca 165
| | ||||| |||||| ||||||||||||| |||||||||
Sbjct: 114 gctgtttttggtcgctgaatccagcgacatgtaaacgaaca 154
Score = 46.1 bits (23), Expect = 8e-06
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 5 tgttcgtttgcctgtcgctgg-ttcagcgaccaaaaatagcga 46
||||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 154 tgttcgtttacatgtcgctggattcagcgaccaaaaacagcga 112
>48030_ath-miRf10930-akr:pmrd
Length = 150
Score = 141 bits (71), Expect = 2e-34
Identities = 135/157 (85%), Gaps = 7/157 (4%)
Strand = Plus / Minus
Query: 7 ttcgtttgcctgtcgctggttcagcgaccaaaaatagcgataatcgccagcgatcagcga 66
||||||||||||||| ||||||||||||||||| |||||| | | ||||||||
Sbjct: 150 ttcgtttgcctgtcgttggttcagcgaccaaaagtagcgacagttgccagcga------- 98
Query: 67 ccgcaatttttggtcgctgaaatttttagcgatcagtcgctggttttagcgattagtcga 126
|||||||||||||||||||||| |||||||||||| |||||||||| |||| |||||||
Sbjct: 97 ccgcaatttttggtcgctgaaaattttagcgatcattcgctggtttcagcgtttagtcgc 38
Query: 127 tacttttgatcgctggatccagcgacatgcaaacgaa 163
| ||||| |||||| ||||||||||||| |||||||
Sbjct: 37 tgtttttggtcgctgaatccagcgacatgtaaacgaa 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 7 ttcgtttgcctgtcgctgg-ttcagcgaccaaaaatagcga 46
||||||| | ||||||||| ||||||||||||||| |||||
Sbjct: 1 ttcgtttacatgtcgctggattcagcgaccaaaaacagcga 41
>47790_ath-miRf10690-akr:pmrd
Length = 124
Score = 141 bits (71), Expect = 2e-34
Identities = 92/99 (92%)
Strand = Plus / Minus
Query: 55 agcgatcagcgaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggtttta 114
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 99 agcgaccagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttca 40
Query: 115 gcgattagtcgatacttttgatcgctggatccagcgaca 153
||||||||||| | |||||| |||||| |||||||||||
Sbjct: 39 gcgattagtcgctgcttttggtcgctgaatccagcgaca 1
>47463_ath-miRf10363-akr:pmrd
Length = 122
Score = 139 bits (70), Expect = 8e-34
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 55 agcgatcagcgaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggtttta 114
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 25 agcgaccagcgaccgcaatttttgatcgctgaaatttttagcgatcagtcgctggtttca 84
Query: 115 gcgattagtcgatacttttgatcgctggatccagcgac 152
||||||||||| | |||||| |||||| ||||||||||
Sbjct: 85 gcgattagtcgctgcttttggtcgctgaatccagcgac 122
>48043_ath-miRf10943-akr:pmrd
Length = 160
Score = 121 bits (61), Expect = 2e-28
Identities = 100/113 (88%)
Strand = Plus / Minus
Query: 1 aagttgttcgtttgcctgtcgctggttcagcgaccaaaaatagcgataatcgccagcgat 60
||||||||||||||| ||||||||||||||||| ||||| |||||| | ||||||| ||
Sbjct: 155 aagttgttcgtttgcttgtcgctggttcagcgatcaaaagtagcgacagtcgccagggac 96
Query: 61 cagcgaccgcaatttttggtcgctgaaatttttagcgatcagtcgctggtttt 113
||||||||| ||||||| |||| | |||||||||||||| |||||||| ||||
Sbjct: 95 cagcgaccgtaattttttgtcgttaaaatttttagcgattagtcgctgctttt 43
Score = 87.7 bits (44), Expect = 2e-18
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 110 ttttagcgattagtcgatacttttgatcgctggatccagcgacatgcaaacgaacaactt 169
|||||||||||||||| | |||||| |||||| |||||||||||||||||||||||||||
Sbjct: 66 ttttagcgattagtcgctgcttttggtcgctgaatccagcgacatgcaaacgaacaactt 7
Score = 56.0 bits (28), Expect = 9e-09
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 1 aagttgttcgtttgcctgtcgctgg-ttcagcgaccaaaa 39
||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 7 aagttgttcgtttgcatgtcgctggattcagcgaccaaaa 46
Score = 56.0 bits (28), Expect = 9e-09
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 122 gtcgatacttttgatcgctggatccagcgacatgcaaacgaacaactt 169
|||| ||||||||||||||| | ||||||||| |||||||||||||||
Sbjct: 109 gtcgctacttttgatcgctgaa-ccagcgacaagcaaacgaacaactt 155
>48042_ath-miRf10942-akr:pmrd
Length = 137
Score = 109 bits (55), Expect = 7e-25
Identities = 94/107 (87%)
Strand = Plus / Minus
Query: 7 ttcgtttgcctgtcgctggttcagcgaccaaaaatagcgataatcgccagcgatcagcga 66
||||||||| ||||||||||||||||| ||||| |||||| | ||||||| || ||||||
Sbjct: 137 ttcgtttgcttgtcgctggttcagcgatcaaaagtagcgacagtcgccagggaccagcga 78
Query: 67 ccgcaatttttggtcgctgaaatttttagcgatcagtcgctggtttt 113
||| ||||||| |||| | |||||||||||||| |||||||| ||||
Sbjct: 77 ccgtaattttttgtcgttaaaatttttagcgattagtcgctgctttt 31
Score = 75.8 bits (38), Expect = 9e-15
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 110 ttttagcgattagtcgatacttttgatcgctggatccagcgacatgcaaacgaa 163
|||||||||||||||| | |||||| |||||| |||||||||||||||||||||
Sbjct: 54 ttttagcgattagtcgctgcttttggtcgctgaatccagcgacatgcaaacgaa 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 7 ttcgtttgcctgtcgctgg-ttcagcgaccaaaa 39
||||||||| ||||||||| ||||||||||||||
Sbjct: 1 ttcgtttgcatgtcgctggattcagcgaccaaaa 34
Score = 44.1 bits (22), Expect = 3e-05
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 122 gtcgatacttttgatcgctggatccagcgacatgcaaacgaa 163
|||| |||||||||||||| || ||||||||| |||||||||
Sbjct: 97 gtcgctacttttgatcgct-gaaccagcgacaagcaaacgaa 137
>47119_ath-miRf10019-akr:pmrd
Length = 115
Score = 95.6 bits (48), Expect = 1e-20
Identities = 84/96 (87%)
Strand = Plus / Plus
Query: 18 gtcgctggttcagcgaccaaaaatagcgataatcgccagcgatcagcgaccgcaattttt 77
|||||||||||||||| ||||| |||||| | ||||||| || ||||||||| |||||||
Sbjct: 1 gtcgctggttcagcgatcaaaagtagcgacagtcgccagggaccagcgaccgtaattttt 60
Query: 78 ggtcgctgaaatttttagcgatcagtcgctggtttt 113
|||| | |||||||||||||| |||||||| ||||
Sbjct: 61 tgtcgttaaaatttttagcgattagtcgctgctttt 96
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 110 ttttagcgattagtcgatacttttgatcgctggatccagcgac 152
|||||||||||||||| | |||||| |||||| ||||||||||
Sbjct: 73 ttttagcgattagtcgctgcttttggtcgctgaatccagcgac 115
