miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47210_ath-miRf10110-akr:pmrd
Length = 93
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 11 ctgcggttgcggcagcggcaacggtaacactgccgcaggttgttgttcgtttcgtcgccg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ctgcggttgcggcagcggcaacggtaacactgccgcaggttgttgttcgtttcgtcgccg 34
Query: 71 ccaacgttgccgcagccgctgtcgc 95
|||||||||||||||||||||||||
Sbjct: 33 ccaacgttgccgcagccgctgtcgc 9
>47110_ath-miRf10010-akr:pmrd
Length = 102
Score = 69.9 bits (35), Expect = 3e-13
Identities = 77/91 (84%), Gaps = 5/91 (5%)
Strand = Plus / Minus
Query: 1 gcggcagcggctgcggttgcggcagcggcaacggtaacactgccgcaggttgttgttcgt 60
||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||
Sbjct: 96 gcggcagcggctgcggtagcggtggcggcaa-----acactaccgcaggttgttgttcgt 42
Query: 61 ttcgtcgccgccaacgttgccgcagccgctg 91
|| || ||||| ||| ||||||||||||||
Sbjct: 41 tttgttgccgcagacgctgccgcagccgctg 11
>47025_ath-miR404:pmrd
Length = 150
Score = 69.9 bits (35), Expect = 3e-13
Identities = 77/91 (84%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 1 gcggcagcggctgcggttgcggcagcggcaacggtaacactgccgcaggttgttgttcgt 60
||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||
Sbjct: 32 gcggcagcggctgcggtagcggtggcggcaa-----acactaccgcaggttgttgttcgt 86
Query: 61 ttcgtcgccgccaacgttgccgcagccgctg 91
|| || ||||| ||| ||||||||||||||
Sbjct: 87 tttgttgccgcagacgctgccgcagccgctg 117
