miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40095_ath-MIR399d:mirbase
          Length = 100

 Score =  182 bits (92), Expect = 3e-47
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggattactgggcgaatactcctatggcagatcgcattggctagatatgcaagtaaaatgc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  ggattactgggcgaatactcctatggcagatcgcattggctagatatgcaagtaaaatgc 64

                                          
Query: 61 ttctctgccaaaggagatttgccccgcaattc 92
          ||||||||||||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgccccgcaattc 96




>39887_aly-MIR399d:mirbase
          Length = 135

 Score =  151 bits (76), Expect = 1e-37
 Identities = 88/92 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggattactgggcgaatactcctatggcagatcgcattggctagatatgcaagtaaaatgc 60
           ||||||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||
Sbjct: 19  ggattactgggcgaatactcctatggcagatagctttgcctagatatgcaagcaaaatgc 78

                                           
Query: 61  ttctctgccaaaggagatttgccccgcaattc 92
           ||||||||||||||||||||||||||||||||
Sbjct: 79  ttctctgccaaaggagatttgccccgcaattc 110




>41448_ptc-MIR399a:mirbase
          Length = 120

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 65  ctgccaaaggagatttgccccgcaattc 92
           ||||||||||||||||||||||||||||
Sbjct: 90  ctgccaaaggagatttgccccgcaattc 117




>41153_tcc-MIR399h:mirbase
          Length = 117

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 65  ctgccaaaggagatttgccccgcaattc 92
           ||||||||||||||||||||||||||||
Sbjct: 76  ctgccaaaggagatttgccccgcaattc 103




>39892_aly-MIR399i:mirbase
          Length = 127

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 65  ctgccaaaggagatttgccccgcaattc 92
           ||||||||||||||||||||||||||||
Sbjct: 91  ctgccaaaggagatttgccccgcaattc 118




>39890_aly-MIR399g:mirbase
          Length = 157

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 65  ctgccaaaggagatttgccccgcaatt 91
           |||||||||||||||||||||||||||
Sbjct: 110 ctgccaaaggagatttgccccgcaatt 136




>41672_vvi-MIR399e:mirbase
          Length = 112

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 63  ctctgccaaaggagatttgccccgcaattc 92
           |||||||||||||||||||||| |||||||
Sbjct: 79  ctctgccaaaggagatttgcccggcaattc 108




>41147_tcc-MIR399b:mirbase
          Length = 135

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 63  ctctgccaaaggagatttgccccgcaattc 92
           |||||||||||||||||||||| |||||||
Sbjct: 92  ctctgccaaaggagatttgcccggcaattc 121




>42046_osa-MIR399f:mirbase
          Length = 117

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 62  tctctgccaaaggagatttgccccgcaat 90
           ||||||||||||||||||||||| |||||
Sbjct: 83  tctctgccaaaggagatttgcccagcaat 111




>41246_csi-MIR399a:mirbase
          Length = 155

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 64  tctgccaaaggagatttgccccgcaattc 92
           ||||||||||||||||||||| |||||||
Sbjct: 112 tctgccaaaggagatttgcccggcaattc 140




>41149_tcc-MIR399d:mirbase
          Length = 136

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 64  tctgccaaaggagatttgccccgcaattc 92
           ||||||||||||||||||||| |||||||
Sbjct: 94  tctgccaaaggagatttgcccggcaattc 122




>42594_sbi-MIR399f:mirbase
          Length = 120

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 63  ctctgccaaaggagatttgccccgcaat 90
           |||||||||||||||||||||| |||||
Sbjct: 78  ctctgccaaaggagatttgcccagcaat 105




>41674_vvi-MIR399g:mirbase
          Length = 113

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 65  ctgccaaaggagatttgccccgcaattc 92
           ||||||||||||||||||||| ||||||
Sbjct: 82  ctgccaaaggagatttgcccctcaattc 109




>41452_ptc-MIR399e:mirbase
          Length = 114

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 65  ctgccaaaggagatttgccccgcaattc 92
           ||||||||| ||||||||||||||||||
Sbjct: 84  ctgccaaagaagatttgccccgcaattc 111




>41451_ptc-MIR399d:mirbase
          Length = 114

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 65  ctgccaaaggagatttgccccgcaattc 92
           ||||||||| ||||||||||||||||||
Sbjct: 84  ctgccaaagaagatttgccccgcaattc 111




>40387_rco-MIR399e:mirbase
          Length = 108

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 64  tctgccaaaggagatttgccccgcaatt 91
           ||||||||||||||||||||| ||||||
Sbjct: 81  tctgccaaaggagatttgcccagcaatt 108




>40299_bna-MIR399:mirbase
          Length = 102

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 61 ttctctgccaaaggagatttgccc 84
          ||||||||||||||||||||||||
Sbjct: 76 ttctctgccaaaggagatttgccc 99




>40096_ath-MIR399e:mirbase
          Length = 109

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 63  ctctgccaaaggagatttgccccgcaat 90
           ||||||||||||||||||||| ||||||
Sbjct: 76  ctctgccaaaggagatttgcctcgcaat 103




>39888_aly-MIR399e:mirbase
          Length = 191

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 63  ctctgccaaaggagatttgccccgcaat 90
           ||||||||||||||||||||| ||||||
Sbjct: 115 ctctgccaaaggagatttgcctcgcaat 142




>39884_aly-MIR399a:mirbase
          Length = 162

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 61  ttctctgccaaaggagatttgccc 84
           ||||||||||||||||||||||||
Sbjct: 108 ttctctgccaaaggagatttgccc 131




>41450_ptc-MIR399c:mirbase
          Length = 126

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 66  tgccaaaggagatttgccccgcaattc 92
           ||||||||||||||||||| |||||||
Sbjct: 97  tgccaaaggagatttgcccggcaattc 123




>41449_ptc-MIR399b:mirbase
          Length = 126

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 66  tgccaaaggagatttgccccgcaattc 92
           ||||||||||||||||||| |||||||
Sbjct: 97  tgccaaaggagatttgcccggcaattc 123




>41148_tcc-MIR399c:mirbase
          Length = 141

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 62  tctctgccaaaggagatttgccccgcaattc 92
           |||||||||| |||||||||||| |||||||
Sbjct: 97  tctctgccaatggagatttgcccagcaattc 127




>40737_mtr-MIR399g:mirbase
          Length = 104

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 65  ctgccaaaggagatttgccccgcaatt 91
           |||||||||||||||||||| ||||||
Sbjct: 78  ctgccaaaggagatttgcccagcaatt 104




>40097_ath-MIR399f:mirbase
          Length = 118

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 62  tctctgccaaaggagatttgccc 84
           |||||||||||||||||||||||
Sbjct: 84  tctctgccaaaggagatttgccc 106




>39889_aly-MIR399f:mirbase
          Length = 167

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 62  tctctgccaaaggagatttgccc 84
           |||||||||||||||||||||||
Sbjct: 108 tctctgccaaaggagatttgccc 130




>42593_sbi-MIR399e:mirbase
          Length = 126

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 65  ctgccaaaggagatttgccccgcaat 90
           |||||||||||||||||||| |||||
Sbjct: 86  ctgccaaaggagatttgcccagcaat 111




>42045_osa-MIR399e:mirbase
          Length = 118

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 65  ctgccaaaggagatttgccccgcaat 90
           |||||||||||||||||||| |||||
Sbjct: 87  ctgccaaaggagatttgcccagcaat 112




>40384_rco-MIR399b:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 65  ctgccaaaggagatttgccccgcaat 90
           |||||||||||||||||||| |||||
Sbjct: 80  ctgccaaaggagatttgcccggcaat 105




>42047_osa-MIR399g:mirbase
          Length = 119

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  tctgccaaaggagatttgccc 84
           |||||||||||||||||||||
Sbjct: 87  tctgccaaaggagatttgccc 107




>41892_hvu-MIR399:mirbase
          Length = 131

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 66  tgccaaaggagatttgccccg 86
           |||||||||||||||||||||
Sbjct: 102 tgccaaaggagatttgccccg 122




>40740_mtr-MIR399j:mirbase
          Length = 91

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 67 gccaaaggagatttgccccgcaatt 91
          ||||||| |||||||||||||||||
Sbjct: 67 gccaaagaagatttgccccgcaatt 91




>40736_mtr-MIR399f:mirbase
          Length = 104

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 64 tctgccaaaggagatttgccc 84
          |||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgccc 97




>40735_mtr-MIR399e:mirbase
          Length = 134

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  tctgccaaaggagatttgccc 84
           |||||||||||||||||||||
Sbjct: 93  tctgccaaaggagatttgccc 113




>40731_mtr-MIR399a:mirbase
          Length = 134

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  tctgccaaaggagatttgccc 84
           |||||||||||||||||||||
Sbjct: 93  tctgccaaaggagatttgccc 113




>40092_ath-MIR399a:mirbase
          Length = 123

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  tctgccaaaggagatttgccc 84
           |||||||||||||||||||||
Sbjct: 91  tctgccaaaggagatttgccc 111




>42824_zma-MIR399f:mirbase
          Length = 105

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 ctgccaaaggagatttgccccgcaattc 92
          ||||||||||| |||||||||| |||||
Sbjct: 65 ctgccaaaggaaatttgccccggaattc 92




>42595_sbi-MIR399g:mirbase
          Length = 125

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 65  ctgccaaaggagatttgccccgcaattc 92
           ||||||||||| |||||||||| |||||
Sbjct: 85  ctgccaaaggaaatttgccccggaattc 112




>42051_osa-MIR399k:mirbase
          Length = 106

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 65  ctgccaaaggagatttgccccgcaattc 92
           ||||||||||| |||||||||| |||||
Sbjct: 75  ctgccaaaggaaatttgccccggaattc 102