miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47018_ath-miR399d:pmrd
Length = 100
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 ggattactgggcgaatactcctatggcagatcgcattggctagatatgcaagtaaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggattactgggcgaatactcctatggcagatcgcattggctagatatgcaagtaaaatgc 64
Query: 61 ttctctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgccccgcaattc 96
>51747_ptc-miR399a:pmrd
Length = 120
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattc 117
>54881_vvi-miR399e:pmrd
Length = 112
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ctctgccaaaggagatttgccccgcaattc 92
|||||||||||||||||||||| |||||||
Sbjct: 79 ctctgccaaaggagatttgcccggcaattc 108
>48969_osa-miR399f:pmrd
Length = 117
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 62 tctctgccaaaggagatttgccccgcaat 90
||||||||||||||||||||||| |||||
Sbjct: 83 tctctgccaaaggagatttgcccagcaat 111
>54883_vvi-miR399g:pmrd
Length = 113
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||| ||||||
Sbjct: 82 ctgccaaaggagatttgcccctcaattc 109
>54494_sbi-miR399f:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 ctctgccaaaggagatttgccccgcaat 90
|||||||||||||||||||||| |||||
Sbjct: 78 ctctgccaaaggagatttgcccagcaat 105
>51751_ptc-miR399e:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||| ||||||||||||||||||
Sbjct: 84 ctgccaaagaagatttgccccgcaattc 111
>51750_ptc-miR399d:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||| ||||||||||||||||||
Sbjct: 84 ctgccaaagaagatttgccccgcaattc 111
>48377_bna-miR399:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 ttctctgccaaaggagatttgccc 84
||||||||||||||||||||||||
Sbjct: 76 ttctctgccaaaggagatttgccc 99
>47019_ath-miR399e:pmrd
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 ctctgccaaaggagatttgccccgcaat 90
||||||||||||||||||||| ||||||
Sbjct: 76 ctctgccaaaggagatttgcctcgcaat 103
>51749_ptc-miR399c:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 tgccaaaggagatttgccccgcaattc 92
||||||||||||||||||| |||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattc 123
>51748_ptc-miR399b:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 tgccaaaggagatttgccccgcaattc 92
||||||||||||||||||| |||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattc 123
>47020_ath-miR399f:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tctctgccaaaggagatttgccc 84
|||||||||||||||||||||||
Sbjct: 84 tctctgccaaaggagatttgccc 106
>54493_sbi-miR399e:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaat 90
|||||||||||||||||||| |||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaat 90
|||||||||||||||||||| |||||
Sbjct: 84 ctgccaaaggagatttgcccagcaat 109
>48968_osa-miR399e:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaat 90
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>52630_ptc-miRf10808-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 66 tgccaaaggagatttgccccgcaat 90
||||||||||||||||||| |||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
>51890_ptc-miRf10068-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 66 tgccaaaggagatttgccccgcaat 90
||||||||||||||||||| |||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
>48970_osa-miR399g:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 tctgccaaaggagatttgccc 84
|||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgccc 107
>48754_mtr-miR399e:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 tctgccaaaggagatttgccc 84
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>48750_mtr-miR399a:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 tctgccaaaggagatttgccc 84
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>47015_ath-miR399a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 tctgccaaaggagatttgccc 84
|||||||||||||||||||||
Sbjct: 91 tctgccaaaggagatttgccc 111
>55096_zma-miR399f:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||| |||||||||| |||||
Sbjct: 65 ctgccaaaggaaatttgccccggaattc 92
>54495_sbi-miR399g:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||| |||||||||| |||||
Sbjct: 85 ctgccaaaggaaatttgccccggaattc 112
>48974_osa-miR399k:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||| |||||||||| |||||
Sbjct: 75 ctgccaaaggaaatttgccccggaattc 102
