miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 182 bits (92), Expect = 5e-46
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 ggattactgggcgaatactcctatggcagatcgcattggctagatatgcaagtaaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggattactgggcgaatactcctatggcagatcgcattggctagatatgcaagtaaaatgc 64
Query: 61 ttctctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgccccgcaattc 96
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||||||||||
Sbjct: 105 ctgccaaaggagatttgccccgcaattc 132
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||||||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaattc 133
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||||||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaattc 133
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||||||||||
Sbjct: 88 ctgccaaaggagatttgccccgcaattc 115
>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
Length = 121
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattc 117
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||||||||||
Sbjct: 77 ctgccaaaggagatttgccccgcaattc 104
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ctctgccaaaggagatttgccccgcaattc 92
|||||||||||||||||||||| |||||||
Sbjct: 83 ctctgccaaaggagatttgcccggcaattc 112
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 64 tctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||| |||||||
Sbjct: 88 tctgccaaaggagatttgcccagcaattc 116
>RF00445;mir-399;AM470981.2/5848-5733 29760:Vitis vinifera
Length = 116
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaa 89
|||||||||||||||||||||||||
Sbjct: 85 ctgccaaaggagatttgccccgcaa 109
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 62 tctctgccaaaggagatttgccccgcaat 90
||||||||||||||||||||||| |||||
Sbjct: 83 tctctgccaaaggagatttgcccagcaat 111
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
|||||||||||||||||||| |||||||
Sbjct: 63 ctgccaaaggagatttgcccggcaattc 90
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
|||||||||||||||||||| |||||||
Sbjct: 78 ctgccaaaggagatttgcccggcaattc 105
>RF00445;mir-399;AC004481.3/13991-14099 3702:Arabidopsis thaliana
(thale cress)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 ctctgccaaaggagatttgccccgcaat 90
||||||||||||||||||||| ||||||
Sbjct: 76 ctctgccaaaggagatttgcctcgcaat 103
>RF00445;mir-399;AARH01002114.1/23429-23543 3694:Populus trichocarpa
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||| ||||||||||||||||||
Sbjct: 84 ctgccaaagaagatttgccccgcaattc 111
>RF00445;mir-399;AARH01014736.1/14382-14268 3694:Populus trichocarpa
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||| ||||||||||||||||||
Sbjct: 84 ctgccaaagaagatttgccccgcaattc 111
>RF00445;mir-399;AASG02001979.1/11398-11282 3988:Ricinus communis
(castor bean)
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||| ||||||||||||||||||
Sbjct: 86 ctgccaaagaagatttgccccgcaattc 113
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
|||||||||||||||||||| |||||||
Sbjct: 85 ctgccaaaggagatttgcccagcaattc 112
>RF00445;mir-399;AM467681.2/20491-20605 29760:Vitis vinifera
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaattc 92
||||||||||||||||||||| ||||||
Sbjct: 84 ctgccaaaggagatttgcccctcaattc 111
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 ctctgccaaaggagatttgccccgcaat 90
|||||||||||||||||||||| |||||
Sbjct: 68 ctctgccaaaggagatttgcccagcaat 95
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tctctgccaaaggagatttgccc 84
|||||||||||||||||||||||
Sbjct: 84 tctctgccaaaggagatttgccc 106
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 tgccaaaggagatttgccccgcaattc 92
||||||||||||||||||| |||||||
Sbjct: 92 tgccaaaggagatttgcccggcaattc 118
>RF00445;mir-399;AC160628.37/100813-100915 3880:Medicago
truncatula (barrel medic)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 gccaaaggagatttgccccgcaattc 92
||||||| ||||||||||||||||||
Sbjct: 74 gccaaagaagatttgccccgcaattc 99
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaat 90
|||||||||||||||||||| |||||
Sbjct: 76 ctgccaaaggagatttgcccagcaat 101
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 ctgccaaaggagatttgccccgcaat 90
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
