miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>47224_ath-miRf10124-akr:pmrd
          Length = 111

 Score =  220 bits (111), Expect = 2e-58
 Identities = 111/111 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcagcacgcaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcagcacgcaa 52

                                                              
Query: 62  atgcaataggtgtcgaacgacacaacagaggtgtcgatcgacaccaacacc 112
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  atgcaataggtgtcgaacgacacaacagaggtgtcgatcgacaccaacacc 1




>48109_ath-miRf11009-akr:pmrd
          Length = 116

 Score =  159 bits (80), Expect = 5e-40
 Identities = 104/112 (92%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcagcacgca 60
           ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct: 114 gggcttggtgtcgaccgacaccaactgggtgttgatcgacaccatcgagagcagcacaca 55

                                                               
Query: 61  aatgcaataggtgtcgaacgacacaacagaggtgtcgatcgacaccaacacc 112
            || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  gatacaatcggtgtcgaacgacacaacagaggtgtcgatcgacaccaacacc 3




>47330_ath-miRf10230-akr:pmrd
          Length = 112

 Score =  145 bits (73), Expect = 8e-36
 Identities = 100/109 (91%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcagcacgca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||  || ||| |||||
Sbjct: 112 gggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccttcatgaccagaacgca 53

                                                            
Query: 61  aatgcaataggtgtcgaacgacacaacagaggtgtcgatcgacaccaac 109
            |||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct: 52  gatgcgattggtgtcgaacaacacaacagaggtgtcgatcgacaccaac 4




>47934_ath-miRf10834-akr:pmrd
          Length = 91

 Score =  137 bits (69), Expect = 2e-33
 Identities = 81/85 (95%)
 Strand = Plus / Minus

                                                                       
Query: 28  ggtgtcgatcgacaccatcgggagcagcacgcaaatgcaataggtgtcgaacgacacaac 87
           ||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||||||||
Sbjct: 85  ggtgtcgatcgacaccatcgggagcagcatgcggatgcaatcggtgtcgaacgacacaac 26

                                    
Query: 88  agaggtgtcgatcgacaccaacacc 112
           |||||||||||||||||||||||||
Sbjct: 25  agaggtgtcgatcgacaccaacacc 1




>47509_ath-miRf10409-akr:pmrd
          Length = 112

 Score =  129 bits (65), Expect = 5e-31
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcagcacgca 60
           ||||||||||||||||||||||||||||||||||||||||||| | |||||||  | | |
Sbjct: 112 gggctcggtgtcgagcgacaccaactgggtgtcgatcgacacctttgggagcataatgta 53

                                                            
Query: 61  aatgcaataggtgtcgaacgacacaacagaggtgtcgatcgacaccaac 109
            | || || |||||||| |||||||||||||||||||||||||||||||
Sbjct: 52  gacgcgattggtgtcgagcgacacaacagaggtgtcgatcgacaccaac 4




>47360_ath-miRf10260-akr:pmrd
          Length = 91

 Score =  105 bits (53), Expect = 7e-24
 Identities = 77/85 (90%)
 Strand = Plus / Plus

                                                                       
Query: 28  ggtgtcgatcgacaccatcgggagcagcacgcaaatgcaataggtgtcgaacgacacaac 87
           |||||||||||||||| |||||||||| ||||  ||||||| ||| | ||| ||||||||
Sbjct: 7   ggtgtcgatcgacaccttcgggagcagaacgcggatgcaatcggtattgaatgacacaac 66

                                    
Query: 88  agaggtgtcgatcgacaccaacacc 112
           |||||||||||||||||||||||||
Sbjct: 67  agaggtgtcgatcgacaccaacacc 91




>47692_ath-miRf10592-akr:pmrd
          Length = 65

 Score = 91.7 bits (46), Expect = 1e-19
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                
Query: 1  gggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcag 54
          |||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 59 gggctcggtgtcgagcgacaccaactaggtgtcgatcgacaccttcgggagcag 6




>48073_ath-miRf10973-akr:pmrd
          Length = 84

 Score = 85.7 bits (43), Expect = 6e-18
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                      
Query: 28 ggtgtcgatcgacaccatcgggagcagcacgcaaatgcaataggtgtcgaacgacacaac 87
          |||||||||||||||||||||||||||||||   | || || |||||||| |||||||||
Sbjct: 71 ggtgtcgatcgacaccatcgggagcagcacgacgacgcgattggtgtcgaccgacacaac 12

                     
Query: 88 agaggtgtcga 98
          |||||||||||
Sbjct: 11 agaggtgtcga 1



 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 79  cgacacaacagaggtgtcgatcgacacca 107
           |||||||||||||||||||||||||||||
Sbjct: 83  cgacacaacagaggtgtcgatcgacacca 55




>48231_ath-miRf11131-akr:pmrd
          Length = 82

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                      
Query: 16 cgacaccaactgggtgtcgatcgacaccatcgggagcagcacgcaaatgcaataggtgtc 75
          |||||||||||||||||||||||||||||||  ||||||| |||  | |  || ||||||
Sbjct: 1  cgacaccaactgggtgtcgatcgacaccatcatgagcagcgcgcggaagtgatcggtgtc 60

                                
Query: 76 gaacgacacaacagaggtgtcg 97
          |||||||| |||||||||||||
Sbjct: 61 gaacgacataacagaggtgtcg 82




>47267_ath-miRf10167-akr:pmrd
          Length = 111

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 70  ggtgtcgaacgacacaacagaggtgtcgatcgacaccaac 109
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  ggtgtcgaacgacacaacagaggtgtcgatcgacaccaac 109




>48181_ath-miRf11081-akr:pmrd
          Length = 104

 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                  
Query: 70  ggtgtcgaacgacacaacagaggtgtcgatcgacaccaa 108
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  ggtgtcgaacgacacaacagaggtgtcgatcgacaccaa 1




>48258_ath-miRf11158-akr:pmrd
          Length = 101

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                              
Query: 8  gtgtcgagcgacaccaactgggtgtcgatcgacacc 43
          ||||||| |||||||||| |||||||||||||||||
Sbjct: 36 gtgtcgaccgacaccaacagggtgtcgatcgacacc 1



 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                
Query: 8   gtgtcgagcgacaccaactgggtgtcgatcgacacca 44
           ||||||| |||||| | ||||||||||||||||||||
Sbjct: 100 gtgtcgaccgacac-agctgggtgtcgatcgacacca 65




>47826_ath-miRf10726-akr:pmrd
          Length = 75

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 7  ggtgtcgagcgacaccaactgggtgtcgatcgacac 42
          ||||| || |||||||||| ||||||||||||||||
Sbjct: 32 ggtgttgaacgacaccaacagggtgtcgatcgacac 67




>47704_ath-miRf10604-akr:pmrd
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 24 actgggtgtcgatcgacacca 44
          |||||||||||||||||||||
Sbjct: 78 actgggtgtcgatcgacacca 58




>47511_ath-miRf10411-akr:pmrd
          Length = 144

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 26 tgggtgtcgatcgacaccatc 46
          |||||||||||||||||||||
Sbjct: 16 tgggtgtcgatcgacaccatc 36




>47198_ath-miRf10098-akr:pmrd
          Length = 140

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 26  tgggtgtcgatcgacaccatc 46
           |||||||||||||||||||||
Sbjct: 127 tgggtgtcgatcgacaccatc 107




>48257_ath-miRf11157-akr:pmrd
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 25 ctgggtgtcgatcgacacca 44
          ||||||||||||||||||||
Sbjct: 77 ctgggtgtcgatcgacacca 58




>47523_ath-miRf10423-akr:pmrd
          Length = 122

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 28  ggtgtcgatcgacaccatcg 47
           ||||||||||||||||||||
Sbjct: 121 ggtgtcgatcgacaccatcg 102




>47147_ath-miRf10047-akr:pmrd
          Length = 91

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 28 ggtgtcgatcgacaccatcg 47
          ||||||||||||||||||||
Sbjct: 71 ggtgtcgatcgacaccatcg 90




>47088_ath-miR855:pmrd
          Length = 272

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                              
Query: 7  ggtgtcgagcgacaccaactgggtgtcgatcgacac 42
          |||||||| |||||||||  | ||||||||||||||
Sbjct: 99 ggtgtcgatcgacaccaagagtgtgtcgatcgacac 64