miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47224_ath-miRf10124-akr:pmrd
Length = 111
Score = 220 bits (111), Expect = 2e-58
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 2 ggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcagcacgcaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcagcacgcaa 52
Query: 62 atgcaataggtgtcgaacgacacaacagaggtgtcgatcgacaccaacacc 112
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 atgcaataggtgtcgaacgacacaacagaggtgtcgatcgacaccaacacc 1
>48109_ath-miRf11009-akr:pmrd
Length = 116
Score = 159 bits (80), Expect = 5e-40
Identities = 104/112 (92%)
Strand = Plus / Minus
Query: 1 gggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcagcacgca 60
||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct: 114 gggcttggtgtcgaccgacaccaactgggtgttgatcgacaccatcgagagcagcacaca 55
Query: 61 aatgcaataggtgtcgaacgacacaacagaggtgtcgatcgacaccaacacc 112
|| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 gatacaatcggtgtcgaacgacacaacagaggtgtcgatcgacaccaacacc 3
>47330_ath-miRf10230-akr:pmrd
Length = 112
Score = 145 bits (73), Expect = 8e-36
Identities = 100/109 (91%)
Strand = Plus / Minus
Query: 1 gggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcagcacgca 60
||||||||||||||||||||||||||||||||||||||||||| || || ||| |||||
Sbjct: 112 gggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccttcatgaccagaacgca 53
Query: 61 aatgcaataggtgtcgaacgacacaacagaggtgtcgatcgacaccaac 109
|||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct: 52 gatgcgattggtgtcgaacaacacaacagaggtgtcgatcgacaccaac 4
>47934_ath-miRf10834-akr:pmrd
Length = 91
Score = 137 bits (69), Expect = 2e-33
Identities = 81/85 (95%)
Strand = Plus / Minus
Query: 28 ggtgtcgatcgacaccatcgggagcagcacgcaaatgcaataggtgtcgaacgacacaac 87
||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 85 ggtgtcgatcgacaccatcgggagcagcatgcggatgcaatcggtgtcgaacgacacaac 26
Query: 88 agaggtgtcgatcgacaccaacacc 112
|||||||||||||||||||||||||
Sbjct: 25 agaggtgtcgatcgacaccaacacc 1
>47509_ath-miRf10409-akr:pmrd
Length = 112
Score = 129 bits (65), Expect = 5e-31
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 1 gggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcagcacgca 60
||||||||||||||||||||||||||||||||||||||||||| | ||||||| | | |
Sbjct: 112 gggctcggtgtcgagcgacaccaactgggtgtcgatcgacacctttgggagcataatgta 53
Query: 61 aatgcaataggtgtcgaacgacacaacagaggtgtcgatcgacaccaac 109
| || || |||||||| |||||||||||||||||||||||||||||||
Sbjct: 52 gacgcgattggtgtcgagcgacacaacagaggtgtcgatcgacaccaac 4
>47360_ath-miRf10260-akr:pmrd
Length = 91
Score = 105 bits (53), Expect = 7e-24
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 28 ggtgtcgatcgacaccatcgggagcagcacgcaaatgcaataggtgtcgaacgacacaac 87
|||||||||||||||| |||||||||| |||| ||||||| ||| | ||| ||||||||
Sbjct: 7 ggtgtcgatcgacaccttcgggagcagaacgcggatgcaatcggtattgaatgacacaac 66
Query: 88 agaggtgtcgatcgacaccaacacc 112
|||||||||||||||||||||||||
Sbjct: 67 agaggtgtcgatcgacaccaacacc 91
>47692_ath-miRf10592-akr:pmrd
Length = 65
Score = 91.7 bits (46), Expect = 1e-19
Identities = 52/54 (96%)
Strand = Plus / Minus
Query: 1 gggctcggtgtcgagcgacaccaactgggtgtcgatcgacaccatcgggagcag 54
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 59 gggctcggtgtcgagcgacaccaactaggtgtcgatcgacaccttcgggagcag 6
>48073_ath-miRf10973-akr:pmrd
Length = 84
Score = 85.7 bits (43), Expect = 6e-18
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 28 ggtgtcgatcgacaccatcgggagcagcacgcaaatgcaataggtgtcgaacgacacaac 87
||||||||||||||||||||||||||||||| | || || |||||||| |||||||||
Sbjct: 71 ggtgtcgatcgacaccatcgggagcagcacgacgacgcgattggtgtcgaccgacacaac 12
Query: 88 agaggtgtcga 98
|||||||||||
Sbjct: 11 agaggtgtcga 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 79 cgacacaacagaggtgtcgatcgacacca 107
|||||||||||||||||||||||||||||
Sbjct: 83 cgacacaacagaggtgtcgatcgacacca 55
>48231_ath-miRf11131-akr:pmrd
Length = 82
Score = 83.8 bits (42), Expect = 2e-17
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 16 cgacaccaactgggtgtcgatcgacaccatcgggagcagcacgcaaatgcaataggtgtc 75
||||||||||||||||||||||||||||||| ||||||| ||| | | || ||||||
Sbjct: 1 cgacaccaactgggtgtcgatcgacaccatcatgagcagcgcgcggaagtgatcggtgtc 60
Query: 76 gaacgacacaacagaggtgtcg 97
|||||||| |||||||||||||
Sbjct: 61 gaacgacataacagaggtgtcg 82
>47267_ath-miRf10167-akr:pmrd
Length = 111
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 70 ggtgtcgaacgacacaacagaggtgtcgatcgacaccaac 109
||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ggtgtcgaacgacacaacagaggtgtcgatcgacaccaac 109
>48181_ath-miRf11081-akr:pmrd
Length = 104
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 70 ggtgtcgaacgacacaacagaggtgtcgatcgacaccaa 108
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 ggtgtcgaacgacacaacagaggtgtcgatcgacaccaa 1
>48258_ath-miRf11158-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 8 gtgtcgagcgacaccaactgggtgtcgatcgacacc 43
||||||| |||||||||| |||||||||||||||||
Sbjct: 36 gtgtcgaccgacaccaacagggtgtcgatcgacacc 1
Score = 42.1 bits (21), Expect = 8e-05
Identities = 34/37 (91%), Gaps = 1/37 (2%)
Strand = Plus / Minus
Query: 8 gtgtcgagcgacaccaactgggtgtcgatcgacacca 44
||||||| |||||| | ||||||||||||||||||||
Sbjct: 100 gtgtcgaccgacac-agctgggtgtcgatcgacacca 65
>47826_ath-miRf10726-akr:pmrd
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 7 ggtgtcgagcgacaccaactgggtgtcgatcgacac 42
||||| || |||||||||| ||||||||||||||||
Sbjct: 32 ggtgttgaacgacaccaacagggtgtcgatcgacac 67
>47704_ath-miRf10604-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 24 actgggtgtcgatcgacacca 44
|||||||||||||||||||||
Sbjct: 78 actgggtgtcgatcgacacca 58
>47511_ath-miRf10411-akr:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 26 tgggtgtcgatcgacaccatc 46
|||||||||||||||||||||
Sbjct: 16 tgggtgtcgatcgacaccatc 36
>47198_ath-miRf10098-akr:pmrd
Length = 140
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 26 tgggtgtcgatcgacaccatc 46
|||||||||||||||||||||
Sbjct: 127 tgggtgtcgatcgacaccatc 107
>48257_ath-miRf11157-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 25 ctgggtgtcgatcgacacca 44
||||||||||||||||||||
Sbjct: 77 ctgggtgtcgatcgacacca 58
>47523_ath-miRf10423-akr:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 28 ggtgtcgatcgacaccatcg 47
||||||||||||||||||||
Sbjct: 121 ggtgtcgatcgacaccatcg 102
>47147_ath-miRf10047-akr:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 28 ggtgtcgatcgacaccatcg 47
||||||||||||||||||||
Sbjct: 71 ggtgtcgatcgacaccatcg 90
>47088_ath-miR855:pmrd
Length = 272
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 7 ggtgtcgagcgacaccaactgggtgtcgatcgacac 42
|||||||| ||||||||| | ||||||||||||||
Sbjct: 99 ggtgtcgatcgacaccaagagtgtgtcgatcgacac 64
