miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AP000492.1/101668-101829 39947:Oryza sativa
Japonica Group
Length = 162
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||||||||||||||| |||||||||||||||||
Sbjct: 158 tactacctccgtttcaagttataagactttctag 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttct 50
|||| ||||||||||| |||||||||||||||
Sbjct: 5 tacttcctccgtttcaagttataagactttct 36
>RF00906;MIR1122;AP005603.3/127883-127741 39947:Oryza sativa
Japonica Group
Length = 143
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| |||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtttcaggttataagactttctag 38
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 16 tattactacctccgtttcaggttataagactttctag 52
||||||| ||||||||||||| |||||||||||||||
Sbjct: 142 tattacttcctccgtttcaggctataagactttctag 106
>RF00906;MIR1122;AP004764.2/29265-29128 39947:Oryza sativa Japonica
Group
Length = 138
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||||||||| |||||| ||||||||||||||||
Sbjct: 134 tactacctccatttcagattataagactttctag 101
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 5 tacttcctccgtttcatattataagactttctag 38
>RF00906;MIR1122;AAAA02033121.1/1765-1675 39946:Oryza sativa
Indica Group
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| |||| ||||||||||||||||||||||||
Sbjct: 5 tactccctctgtttcaggttataagactttctag 38
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 87 tacttcctccgtttcatattataagactttctag 54
>RF00906;MIR1122;AACV01003992.1/29908-29746 39947:Oryza sativa
Japonica Group
Length = 163
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| |||||||||||| ||||||||||||||||
Sbjct: 159 tactccctccgtttcagattataagactttctag 126
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtttcatattataagactttctag 38
>RF00906;MIR1122;AP005308.3/147987-147826 39947:Oryza sativa
Japonica Group
Length = 162
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 17 attactacctccgtttcaggttataagactttctag 52
|||||| ||||||||||| ||||||||||||||||
Sbjct: 160 attactccctccgtttcatattataagactttctag 125
>RF00906;MIR1122;CR855160.1/66114-66007 4530:Oryza sativa (rice)
Length = 108
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 17 attactacctccgtttcaggttataagactttctag 52
|||||| ||||||||||| ||||||||||||||||
Sbjct: 3 attactccctccgtttcatattataagactttctag 38
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 17 attactacctccgtttcaggttataagactttctag 52
|||||| ||||||||||| ||||||||||||||||
Sbjct: 106 attacttcctccgtttcatattataagactttctag 71
>RF00906;MIR1122;AP004026.3/36995-37112 39947:Oryza sativa Japonica
Group
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 18 ttactacctccgtttcaggttataagactttctag 52
||||| ||||||||||| ||||||||||||||||
Sbjct: 115 ttacttcctccgtttcatattataagactttctag 81
>RF00906;MIR1122;AAAA02023450.1/14767-14902 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtttcatattataagactttctag 38
>RF00906;MIR1122;AP008215.1/18276529-18276660 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtttcatattataagactttctag 38
>RF00906;MIR1122;AC223445.1/72991-73152 4538:Oryza glaberrima
(African rice)
Length = 162
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtttcatattataagactttctag 38
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 158 tacttcctccgtttcatattataagactttctag 125
>RF00906;MIR1122;AACV01013308.1/27395-27278 39947:Oryza sativa
Japonica Group
Length = 118
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 114 tacttcctccgtttcatattataagactttctag 81
>RF00906;MIR1122;AC145367.2/80971-81106 39947:Oryza sativa
Japonica Group
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtttcatattataagactttctag 38
>RF00906;MIR1122;AAAA02027724.1/15381-15250 39946:Oryza sativa
Indica Group
Length = 132
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 128 tactccctccgtttcatattataagactttctag 95
>RF00906;MIR1122;AP008214.1/27990633-27990493 39947:Oryza sativa
Japonica Group
Length = 141
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtttcatattataagactttctag 38
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 137 tacttcctccgtttcatattataagactttctag 104
>RF00906;MIR1122;AAAA02022921.1/15118-15235 39946:Oryza sativa
Indica Group
Length = 118
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 114 tacttcctccgtttcatattataagactttctag 81
>RF00906;MIR1122;AAAA02024119.1/11927-11764 39946:Oryza sativa
Indica Group
Length = 164
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 5 tacttcctccgtttcatattataagactttctag 38
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 160 tactccctccgtttcatattataagactttctag 127
>RF00906;MIR1122;ABRL01002327.1/13187-13322 65489:Oryza barthii
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 5 tacttcctccgtttcatattataagactttctag 38
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 132 tactccctccgtttcaaattataagactttctag 99
>RF00906;MIR1122;AACV01016547.1/15069-15198 39947:Oryza sativa
Japonica Group
Length = 130
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 19 tactacctccgtttcaggttataagactttctag 52
|||| ||||||||||| ||||||||||||||||
Sbjct: 126 tacttcctccgtttcatattataagactttctag 93
