miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45591_miR1128:micropc
Length = 141
Score = 268 bits (135), Expect = 1e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 8 tactccctccgtccgaaaagtgaatctagcctctgtatgtgacacattatagtacaacga 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactccctccgtccgaaaagtgaatctagcctctgtatgtgacacattatagtacaacga 60
Query: 68 atgtggatagaaatatgtgtagattcgtagtactaggatntgtcgcatcgagtnttggtt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgtggatagaaatatgtgtagattcgtagtactaggatntgtcgcatcgagtnttggtt 120
Query: 128 ttttatgggacggagggagtg 148
|||||||||||||||||||||
Sbjct: 121 ttttatgggacggagggagtg 141
>44936_miR1128:micropc
Length = 141
Score = 268 bits (135), Expect = 1e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 8 tactccctccgtccgaaaagtgaatctagcctctgtatgtgacacattatagtacaacga 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactccctccgtccgaaaagtgaatctagcctctgtatgtgacacattatagtacaacga 60
Query: 68 atgtggatagaaatatgtgtagattcgtagtactaggatntgtcgcatcgagtnttggtt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgtggatagaaatatgtgtagattcgtagtactaggatntgtcgcatcgagtnttggtt 120
Query: 128 ttttatgggacggagggagtg 148
|||||||||||||||||||||
Sbjct: 121 ttttatgggacggagggagtg 141
>46802_miR1436:micropc
Length = 138
Score = 214 bits (108), Expect = 1e-56
Identities = 131/139 (94%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 9 actccctccgtccgaaaagtgaatctagcctctgtatgtgacacattatagtacaacgaa 68
||||||||||||| |||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 actccctccgtcccaaaagtnaatctanc-tctgtatgtgacacattatagtacaacgaa 59
Query: 69 tgtggatagaaatatgtgtagattcgtagtactaggatntgtcgcatcgagtnttggttt 128
| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct: 60 tctggatagaaatatgtgtanattcgtagtactaggatgtgtcgcatcgagtgttggttt 119
Query: 129 tttatgggacggagggagt 147
|||||||||||||||||||
Sbjct: 120 tttatgggacggagggagt 138
>46498_miR1436:micropc
Length = 138
Score = 214 bits (108), Expect = 1e-56
Identities = 131/139 (94%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 9 actccctccgtccgaaaagtgaatctagcctctgtatgtgacacattatagtacaacgaa 68
||||||||||||| |||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 actccctccgtcccaaaagtnaatctanc-tctgtatgtgacacattatagtacaacgaa 59
Query: 69 tgtggatagaaatatgtgtagattcgtagtactaggatntgtcgcatcgagtnttggttt 128
| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct: 60 tctggatagaaatatgtgtanattcgtagtactaggatgtgtcgcatcgagtgttggttt 119
Query: 129 tttatgggacggagggagt 147
|||||||||||||||||||
Sbjct: 120 tttatgggacggagggagt 138
>46084_miR1436:micropc
Length = 138
Score = 214 bits (108), Expect = 1e-56
Identities = 131/139 (94%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 9 actccctccgtccgaaaagtgaatctagcctctgtatgtgacacattatagtacaacgaa 68
||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 1 actccctccgtcccaaaagtnaatcta-nctctgtatgtgacacattatagtacaacgaa 59
Query: 69 tgtggatagaaatatgtgtagattcgtagtactaggatntgtcgcatcgagtnttggttt 128
| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct: 60 tctggatagaaatatgtgtanattcgtagtactaggatgtgtcgcatcgagtgttggttt 119
Query: 129 tttatgggacggagggagt 147
|||||||||||||||||||
Sbjct: 120 tttatgggacggagggagt 138
>45568_miR1436:micropc
Length = 138
Score = 214 bits (108), Expect = 1e-56
Identities = 131/139 (94%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 9 actccctccgtccgaaaagtgaatctagcctctgtatgtgacacattatagtacaacgaa 68
||||||||||||| |||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 actccctccgtcccaaaagtnaatctanc-tctgtatgtgacacattatagtacaacgaa 59
Query: 69 tgtggatagaaatatgtgtagattcgtagtactaggatntgtcgcatcgagtnttggttt 128
| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct: 60 tctggatagaaatatgtgtanattcgtagtactaggatgtgtcgcatcgagtgttggttt 119
Query: 129 tttatgggacggagggagt 147
|||||||||||||||||||
Sbjct: 120 tttatgggacggagggagt 138
>45497_miR1436:micropc
Length = 138
Score = 214 bits (108), Expect = 1e-56
Identities = 131/139 (94%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 9 actccctccgtccgaaaagtgaatctagcctctgtatgtgacacattatagtacaacgaa 68
||||||||||||| |||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 actccctccgtcccaaaagtnaatctanc-tctgtatgtgacacattatagtacaacgaa 59
Query: 69 tgtggatagaaatatgtgtagattcgtagtactaggatntgtcgcatcgagtnttggttt 128
| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct: 60 tctggatagaaatatgtgtanattcgtagtactaggatgtgtcgcatcgagtgttggttt 119
Query: 129 tttatgggacggagggagt 147
|||||||||||||||||||
Sbjct: 120 tttatgggacggagggagt 138
>45178_miR1436:micropc
Length = 138
Score = 214 bits (108), Expect = 1e-56
Identities = 131/139 (94%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 9 actccctccgtccgaaaagtgaatctagcctctgtatgtgacacattatagtacaacgaa 68
||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 1 actccctccgtcccaaaagtnaatcta-nctctgtatgtgacacattatagtacaacgaa 59
Query: 69 tgtggatagaaatatgtgtagattcgtagtactaggatntgtcgcatcgagtnttggttt 128
| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct: 60 tctggatagaaatatgtgtanattcgtagtactaggatgtgtcgcatcgagtgttggttt 119
Query: 129 tttatgggacggagggagt 147
|||||||||||||||||||
Sbjct: 120 tttatgggacggagggagt 138
>45233_miR1128:micropc
Length = 133
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 7 gtactccctccgtccgaaaa 26
||||||||||||||||||||
Sbjct: 131 gtactccctccgtccgaaaa 112
