miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48017_ath-miRf10917-akr:pmrd
Length = 96
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatat 34
Query: 61 atttgtacactaaaagtgatgtacaatcta 90
||||||||||||||||||||||||||||||
Sbjct: 33 atttgtacactaaaagtgatgtacaatcta 4
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 3 gattgtacatcacttttagtgtacaaat 30
||||||||||||||||||||||||||||
Sbjct: 6 gattgtacatcacttttagtgtacaaat 33
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 64 atttgtacactaaaagtgatgtacaatc 91
>48297_ath-miRf11197-akr:pmrd
Length = 162
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Minus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatat 60
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 126 tggattgtacatcacttttagtatacaaatgtaaagtgtacgctgtgtatttttatatat 67
Query: 61 atttgtacactaaaagtgatgtacaatcta 90
||||||||||||||||||||||||||||||
Sbjct: 66 atttgtacactaaaagtgatgtacaatcta 37
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 3 gattgtacatcacttttagtgtacaaat 30
||||||||||||||||||||||||||||
Sbjct: 39 gattgtacatcacttttagtgtacaaat 66
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||| ||||||||||||||||||||
Sbjct: 97 atttgtatactaaaagtgatgtacaatc 124
>48296_ath-miRf11196-akr:pmrd
Length = 100
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Minus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatat 60
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 95 tggattgtacatcacttttagtatacaaatgtaaagtgtacgctgtgtatttttatatat 36
Query: 61 atttgtacactaaaagtgatgtacaatcta 90
||||||||||||||||||||||||||||||
Sbjct: 35 atttgtacactaaaagtgatgtacaatcta 6
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 3 gattgtacatcacttttagtgtacaaat 30
||||||||||||||||||||||||||||
Sbjct: 8 gattgtacatcacttttagtgtacaaat 35
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||| ||||||||||||||||||||
Sbjct: 66 atttgtatactaaaagtgatgtacaatc 93
>48080_ath-miRf10980-akr:pmrd
Length = 100
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatat 60
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 6 tggattgtacatcacttttagtgtacaaatgtaaaatgtacgctgtgtatttttatatat 65
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 66 atttgtacactaaaagtgatgtacaatc 93
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 tggattgtacatcacttttagtgtacaaat 30
||||||||||||||||||||||||||||||
Sbjct: 95 tggattgtacatcacttttagtgtacaaat 66
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 35 atttgtacactaaaagtgatgtacaatc 8
>47793_ath-miRf10693-akr:pmrd
Length = 102
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Minus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatat 60
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 96 tggattgtacatcacttttagtgtacaaatgtaaaatgtacgctgtgtatttttatatat 37
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 36 atttgtacactaaaagtgatgtacaatc 9
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggattgtacatcacttttagtgtacaaat 30
||||||||||||||||||||||||||||||
Sbjct: 7 tggattgtacatcacttttagtgtacaaat 36
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 67 atttgtacactaaaagtgatgtacaatc 94
>47792_ath-miRf10692-akr:pmrd
Length = 162
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Minus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatat 60
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 126 tggattgtacatcacttttagtgtacaaatgtaaaatgtacgctgtgtatttttatatat 67
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 66 atttgtacactaaaagtgatgtacaatc 39
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggattgtacatcacttttagtgtacaaat 30
||||||||||||||||||||||||||||||
Sbjct: 37 tggattgtacatcacttttagtgtacaaat 66
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 97 atttgtacactaaaagtgatgtacaatc 124
>48079_ath-miRf10979-akr:pmrd
Length = 162
Score = 155 bits (78), Expect = 6e-39
Identities = 87/90 (96%)
Strand = Plus / Minus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatat 60
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 126 tggattatacatcacttttagtgtacaaatgtaaagtgtacgctgtgtatttttatatat 67
Query: 61 atttgtacactaaaagtgatgtacaatcta 90
|||||||||||||||||| |||||||||||
Sbjct: 66 atttgtacactaaaagtggtgtacaatcta 37
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 gattgtacatcacttttagtgtacaaat 30
||||||||| ||||||||||||||||||
Sbjct: 39 gattgtacaccacttttagtgtacaaat 66
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||| ||||
Sbjct: 97 atttgtacactaaaagtgatgtataatc 124
>48232_ath-miRf11132-akr:pmrd
Length = 100
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 3 gattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatatat 62
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 8 gattgtacatcacttttagtgtacaaatgtaaagtgtacgctgtatatttttatatatat 67
Query: 63 ttgtacactaaaagtgatgtacaatcta 90
|||||||||||||||| |||||||||||
Sbjct: 68 ttgtacactaaaagtggtgtacaatcta 95
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 61 atttgtacactaaaagtgatgtacaatcta 90
||||||||||||||||||||||||||||||
Sbjct: 35 atttgtacactaaaagtgatgtacaatcta 6
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 3 gattgtacatcacttttagtgtacaaat 30
||||||||| ||||||||||||||||||
Sbjct: 93 gattgtacaccacttttagtgtacaaat 66
>48140_ath-miRf11040-akr:pmrd
Length = 100
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Minus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatat 60
|||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct: 95 tggattgtacatcacttttagtgtacaaatataaaatgtacgctgtgtatttttatatat 36
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 35 atttgtacactaaaagtgatgtacaatc 8
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 58 tatatttgtacactaaaagtgatgtacaatc 88
|||||||||||||||||||||||||||||||
Sbjct: 63 tatatttgtacactaaaagtgatgtacaatc 93
>47849_ath-miRf10749-akr:pmrd
Length = 102
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatat 60
|||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct: 7 tggattgtacatcacttttagtgtacaaatataaaatgtacgctgtgtatttttatatat 66
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 67 atttgtacactaaaagtgatgtacaatc 94
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 58 tatatttgtacactaaaagtgatgtacaatc 88
|||||||||||||||||||||||||||||||
Sbjct: 39 tatatttgtacactaaaagtgatgtacaatc 9
>48190_ath-miRf11090-akr:pmrd
Length = 101
Score = 141 bits (71), Expect = 1e-34
Identities = 87/91 (95%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgta-tttttatata 59
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 6 tggattgtacatcacttttagtgtacaaatgtaaagtgtacgctgtgtattttttatata 65
Query: 60 tatttgtacactaaaagtgatgtacaatcta 90
||| ||||||||||||||| |||||||||||
Sbjct: 66 tatctgtacactaaaagtggtgtacaatcta 96
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 35 atttgtacactaaaagtgatgtacaatc 8
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 3 gattgtacatcacttttagtgtaca 27
||||||||| |||||||||||||||
Sbjct: 94 gattgtacaccacttttagtgtaca 70
>48157_ath-miRf11057-akr:pmrd
Length = 101
Score = 141 bits (71), Expect = 1e-34
Identities = 87/91 (95%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgta-tttttatata 59
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 6 tggattgtacatcacttttagtgtacaaatgtaaagtgtacgctgtgtattttttatata 65
Query: 60 tatttgtacactaaaagtgatgtacaatcta 90
|||||||||||||||||| |||||||||||
Sbjct: 66 catttgtacactaaaagtggtgtacaatcta 96
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 35 atttgtacactaaaagtgatgtacaatc 8
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 3 gattgtacatcacttttagtgtacaaatgta 33
||||||||| |||||||||||||||||||||
Sbjct: 94 gattgtacaccacttttagtgtacaaatgta 64
>48005_ath-miRf10905-akr:pmrd
Length = 163
Score = 141 bits (71), Expect = 1e-34
Identities = 87/91 (95%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 1 tggattgtac-atcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatata 59
|||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 127 tggattgtactatcacttttagtgtacaaatataaagtgtacgctgtgtatttttatata 68
Query: 60 tatttgtacactaaaagtgatgtacaatcta 90
||||||||||||||||||| |||||||||||
Sbjct: 67 tatttgtacactaaaagtggtgtacaatcta 37
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 gattgtacatcacttttagtgtacaaat 30
||||||||| ||||||||||||||||||
Sbjct: 39 gattgtacaccacttttagtgtacaaat 66
Score = 48.1 bits (24), Expect = 1e-06
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 58 tatatttgtacactaaaagtgat-gtacaatc 88
||||||||||||||||||||||| ||||||||
Sbjct: 94 tatatttgtacactaaaagtgatagtacaatc 125
>47860_ath-miRf10760-akr:pmrd
Length = 163
Score = 141 bits (71), Expect = 1e-34
Identities = 87/91 (95%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtat-ttttatata 59
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 127 tggattgtacatcacttttagtgtacaaatgtaaagtgtacgctgtgtattttttatata 68
Query: 60 tatttgtacactaaaagtgatgtacaatcta 90
|||||||||||||||||| |||||||||||
Sbjct: 67 catttgtacactaaaagtggtgtacaatcta 37
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||||||||||||||||||||||
Sbjct: 98 atttgtacactaaaagtgatgtacaatc 125
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 gattgtacatcacttttagtgtacaaatgta 33
||||||||| |||||||||||||||||||||
Sbjct: 39 gattgtacaccacttttagtgtacaaatgta 69
>48007_ath-miRf10907-akr:pmrd
Length = 162
Score = 125 bits (63), Expect = 6e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 3 gattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtatttttatatatat 62
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 39 gattgtacaccacttttagtgtacaaatgtaaagtgtactctgtgtatttttatatacat 98
Query: 63 ttgtacactaaaagt 77
|||||||||||||||
Sbjct: 99 ttgtacactaaaagt 113
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 61 atttgtacactaaaagtgatgtacaatcta 90
|||||||||||||||||| |||||||||||
Sbjct: 66 atttgtacactaaaagtggtgtacaatcta 37
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 14 acttttagtgtacaaatgta 33
||||||||||||||||||||
Sbjct: 113 acttttagtgtacaaatgta 94
>48249_ath-miRf11149-akr:pmrd
Length = 161
Score = 111 bits (56), Expect = 9e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 8 tacatcacttttagtgtacaaatgtaaagtgtacactgtgta-tttttatatatatttgt 66
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |||
Sbjct: 42 tacatcacttttagtgtacaaatgtaaagtgtacgctgtgtattttttatatacatctgt 101
Query: 67 acactaaaagtgatgtacaatcta 90
||||||||| || |||||||||||
Sbjct: 102 acactaaaaatggtgtacaatcta 125
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 61 atttgtacactaaaagtgatgta 83
|||||||||||||||||||||||
Sbjct: 64 atttgtacactaaaagtgatgta 42
>47958_ath-miRf10858-akr:pmrd
Length = 161
Score = 111 bits (56), Expect = 9e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 8 tacatcacttttagtgtacaaatgtaaagtgtacactgtgtat-ttttatatatatttgt 66
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||
Sbjct: 120 tacatcacttttagtgtacaaatgtaaagtgtacgctgtgtattttttatatacatctgt 61
Query: 67 acactaaaagtgatgtacaatcta 90
||||||||| || |||||||||||
Sbjct: 60 acactaaaaatggtgtacaatcta 37
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 atttgtacactaaaagtgatgta 83
|||||||||||||||||||||||
Sbjct: 98 atttgtacactaaaagtgatgta 120
>47852_ath-miRf10752-akr:pmrd
Length = 103
Score = 103 bits (52), Expect = 2e-23
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgta-tttttatata 59
|||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||
Sbjct: 7 tggattgtacatcacttttagtgtgcaaatgtaaagtgtacgctgtgtattttttatata 66
Query: 60 tatttgtacactaaaa 75
|| ||||||||||||
Sbjct: 67 catctgtacactaaaa 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||| ||||||||||||||||||||||
Sbjct: 36 atttgcacactaaaagtgatgtacaatc 9
>48194_ath-miRf11094-akr:pmrd
Length = 163
Score = 101 bits (51), Expect = 8e-23
Identities = 79/87 (90%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgtat-ttttatata 59
|||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct: 127 tggattgtacatcacttttattgtacaaatgtaaagtgtacgctgtgtattttttatata 68
Query: 60 tatttgtacactaaaagtgatgtacaa 86
|| || ||||||||||| |||||||
Sbjct: 67 catctgatcactaaaagtggtgtacaa 41
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||| ||||||||||||||||||
Sbjct: 98 atttgtacaataaaagtgatgtacaatc 125
>47901_ath-miRf10801-akr:pmrd
Length = 163
Score = 101 bits (51), Expect = 8e-23
Identities = 79/87 (90%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 tggattgtacatcacttttagtgtacaaatgtaaagtgtacactgtgta-tttttatata 59
|||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct: 37 tggattgtacatcacttttattgtacaaatgtaaagtgtacgctgtgtattttttatata 96
Query: 60 tatttgtacactaaaagtgatgtacaa 86
|| || ||||||||||| |||||||
Sbjct: 97 catctgatcactaaaagtggtgtacaa 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 61 atttgtacactaaaagtgatgtacaatc 88
||||||||| ||||||||||||||||||
Sbjct: 66 atttgtacaataaaagtgatgtacaatc 39
>47654_ath-miRf10554-akr:pmrd
Length = 143
Score = 46.1 bits (23), Expect = 4e-06
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 16 ttttagtgtacaaatgtaaagtgtacactgtgtatttttatatatat 62
|||||||||||| |||||| |||||| ||||||| |||||||||||
Sbjct: 43 ttttagtgtacagatgtaa-gtgtacgttgtgtatatttatatatat 88
