miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00893;MIR854;AC018660.1/24784-25004 3702:Arabidopsis thaliana
(thale cress)
Length = 221
Score = 400 bits (202), Expect = e-111
Identities = 202/202 (100%)
Strand = Plus / Plus
Query: 1 ggatagggaggaggagtacgatacgagcatgtatcatttcagtgagcatgtacctccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggatagggaggaggagtacgatacgagcatgtatcatttcagtgagcatgtacctccagc 67
Query: 61 gagggagagcaagagcttgagcgaagctcacagaaacaacagcaagttgcagaagtggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gagggagagcaagagcttgagcgaagctcacagaaacaacagcaagttgcagaagtggtg 127
Query: 121 caagaaacaagataggctactcatcaagtgcttcaaggccatcaagtttctgactgacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 caagaaacaagataggctactcatcaagtgcttcaaggccatcaagtttctgactgacaa 187
Query: 181 gctaagctgctcctcttctacc 202
||||||||||||||||||||||
Sbjct: 188 gctaagctgctcctcttctacc 209
>RF00893;MIR854;AL138663.1/34000-34220 3702:Arabidopsis thaliana
(thale cress)
Length = 221
Score = 258 bits (130), Expect = 3e-68
Identities = 172/186 (92%)
Strand = Plus / Plus
Query: 13 ggagtacgatacgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaa 72
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 20 ggagtatgacacgagcatgtatcattttagtgagcatgtacctccagcgagggagagcaa 79
Query: 73 gagcttgagcgaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaaga 132
||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 80 gagtttgagtgaatctcacagaaacaacagcaagttgcaaaagtggtgcaagaaacaaga 139
Query: 133 taggctactcatcaagtgcttcaaggccatcaagtttctgactgacaagctaagctgctc 192
|| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 140 taaattactcattaagtgcttcaaggctatcaagtttctgaaggacaagctaagctgctc 199
Query: 193 ctcttc 198
||||||
Sbjct: 200 ctcttc 205
>RF00893;MIR854;AC012327.6/13571-13791 3702:Arabidopsis thaliana
(thale cress)
Length = 221
Score = 216 bits (109), Expect = 9e-56
Identities = 169/189 (89%)
Strand = Plus / Plus
Query: 13 ggagtacgatacgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaa 72
|||||| || ||||| ||||||||||| ||||||||||||||||||||| |||||| |||
Sbjct: 20 ggagtatgacacgagaatgtatcattttagtgagcatgtacctccagcgggggagaccaa 79
Query: 73 gagcttgagcgaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaaga 132
||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 80 gagtttgagtgaagctcatagaaacaacagcaagttgcagaagtggtgcaaggaacaaga 139
Query: 133 taggctactcatcaagtgcttcaaggccatcaagtttctgactgacaagctaagctgctc 192
|| | ||||||| |||||||||||| | ||||||||||| | || |||||||| |||||
Sbjct: 140 taagttactcattaagtgcttcaagactatcaagtttctcaaggagaagctaagttgctc 199
Query: 193 ctcttctac 201
|||||||||
Sbjct: 200 ctcttctac 208
>RF00893;MIR854;AF178045.1/82102-81882 3702:Arabidopsis thaliana
(thale cress)
Length = 221
Score = 202 bits (102), Expect = 1e-51
Identities = 156/174 (89%)
Strand = Plus / Plus
Query: 23 acgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagc 82
|||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 30 acgagcatgtctcatttcagtgagcatgtacctccagcgagggaaagcaagagtttgagt 89
Query: 83 gaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaagataggctactc 142
||||||||||| ||||||| |||||||||||||||||| |||||||| |||| | ||||
Sbjct: 90 gaagctcacaggaacaacaacaagttgcagaagtggtgtaagaaacatgataagttactt 149
Query: 143 atcaagtgcttcaaggccatcaagtttctgactgacaagctaagctgctcctct 196
||||||| |||| || ||||||||||||| |||||||||||||||||||||
Sbjct: 150 gccaagtgcctcaaagctatcaagtttctgaaggacaagctaagctgctcctct 203
>RF00893;MIR854;AB016878.1/69641-69421 3702:Arabidopsis thaliana
(thale cress)
Length = 221
Score = 194 bits (98), Expect = 3e-49
Identities = 155/174 (89%)
Strand = Plus / Plus
Query: 23 acgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagc 82
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 30 acgagaatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagttttagt 89
Query: 83 gaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaagataggctactc 142
|||||||||| |||||||||||||| ||||||||||||||||||| |||| | ||||
Sbjct: 90 gaagctcacaagaacaacagcaagttatagaagtggtgcaagaaacaggataagtaactc 149
Query: 143 atcaagtgcttcaaggccatcaagtttctgactgacaagctaagctgctcctct 196
||||| ||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 150 gccaagttcttcaaggctatcaagtttcttaaggacaagctaagctgctcctct 203
>RF00893;MIR854;AB046438.1/51038-50818 3702:Arabidopsis thaliana
(thale cress)
Length = 221
Score = 192 bits (97), Expect = 1e-48
Identities = 154/173 (89%)
Strand = Plus / Plus
Query: 26 agcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagcgaa 85
|||||||||||||| ||||||||||||||||| | |||||||||||||| ||||| |||
Sbjct: 33 agcatgtatcattttagtgagcatgtacctccgacaagggagagcaagagtttgagtgaa 92
Query: 86 gctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaagataggctactcatc 145
||||||| |||||||||||| |||||||||||||||||||||| |||| | ||||| |
Sbjct: 93 gctcacatgaacaacagcaagctgcagaagtggtgcaagaaacatgataagttactcgcc 152
Query: 146 aagtgcttcaaggccatcaagtttctgactgacaagctaagctgctcctcttc 198
|||||||||||| | |||||||||||||| || ||||| ||||||||||||||
Sbjct: 153 aagtgcttcaagactatcaagtttctgacagataagctgagctgctcctcttc 205
>RF00893;MIR854;AF160181.1/16088-15875 3702:Arabidopsis thaliana
(thale cress)
Length = 214
Score = 186 bits (94), Expect = 8e-47
Identities = 136/150 (90%)
Strand = Plus / Plus
Query: 20 gatacgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttg 79
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 27 gatactagcatgtatcattttagtgagcatgtacctccagcgagggagagcaagagtatg 86
Query: 80 agcgaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaagataggcta 139
|| ||||||||||| |||||||||||| |||||||||||||||||||||| |||| | ||
Sbjct: 87 agtgaagctcacaggaacaacagcaagctgcagaagtggtgcaagaaacaggataagtta 146
Query: 140 ctcatcaagtgcttcaaggccatcaagttt 169
||| ||||||||||||| | |||||||||
Sbjct: 147 ctcgccaagtgcttcaagactatcaagttt 176
>RF00893;MIR854;AC063973.10/100961-101135 3702:Arabidopsis thaliana
(thale cress)
Length = 175
Score = 184 bits (93), Expect = 3e-46
Identities = 111/117 (94%)
Strand = Plus / Plus
Query: 2 gatagggaggaggagtacgatacgagcatgtatcatttcagtgagcatgtacctccagcg 61
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5 gatagggaggaggagtacgatacgagcatgtatcatttcagtgagcacgtacctccagcg 64
Query: 62 agggagagcaagagcttgagcgaagctcacagaaacaacagcaagttgcagaagtgg 118
|| |||||||||||||||||||| |||||||||||||||| |||||||||| ||||
Sbjct: 65 cggaagagcaagagcttgagcgaaactcacagaaacaacagtaagttgcagaggtgg 121
>RF00893;MIR854;AB073155.1/110157-109942 3702:Arabidopsis thaliana
(thale cress)
Length = 216
Score = 180 bits (91), Expect = 5e-45
Identities = 140/155 (90%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 29 atgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagcgaagct 88
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 36 atgtatcattttagtgaacatgtacctccagcgagggagagcaagagcttgagtgaagct 95
Query: 89 cacagaaacaacagcaagttgcagaagtggtgcaagaaacaagataggctactcatcaag 148
||||| ||||||| |||| ||||||||||||||||||||||||| | | ||||| ||||
Sbjct: 96 cacaggaacaacaacaagctgcagaagtggtgcaagaaacaagacaagttactcgccaag 155
Query: 149 tgcttcaaggccatcaagtttctgactgacaagct 183
||||||||| ||||| |||||||||| || |||||
Sbjct: 156 tgcttcaagaccatc-agtttctgacagataagct 189
>RF00893;MIR854;AF147263.1/9701-9482 3702:Arabidopsis thaliana
(thale cress)
Length = 220
Score = 161 bits (81), Expect = 5e-39
Identities = 114/125 (91%)
Strand = Plus / Plus
Query: 8 gaggaggagtacgatacgagcatgtatcatttcagtgagcatgtacctccagcgagggag 67
|||||| |||| ||| | ||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct: 14 gaggagaagtatgattcaagcatgtatcatttcagtgagcacgtagctctagcgagggag 73
Query: 68 agcaagagcttgagcgaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaa 127
|| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 74 agtaagagcttgagtgaagctcacagaaacaatagcaagttgcagaagtggtgcaagaag 133
Query: 128 caaga 132
|||||
Sbjct: 134 caaga 138
>RF00893;MIR854;AC069329.6/116507-116706 3702:Arabidopsis thaliana
(thale cress)
Length = 200
Score = 161 bits (81), Expect = 5e-39
Identities = 102/109 (93%)
Strand = Plus / Plus
Query: 26 agcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagcgaa 85
|||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||||
Sbjct: 29 agcatgtatcatttcagtgagcatatacctcgagcgagggatagcaagagtttgagcgaa 88
Query: 86 gctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaagata 134
|||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct: 89 gctcacaggaacaacagcaagctgcagaagtggtgcaagaaacatgata 137
>RF00893;MIR854;AC006268.1/101870-102090 3702:Arabidopsis thaliana
(thale cress)
Length = 221
Score = 159 bits (80), Expect = 2e-38
Identities = 152/176 (86%)
Strand = Plus / Plus
Query: 23 acgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagc 82
||||||||||||||||||||||||||| ||||||| ||||||| |||| ||| ||||||
Sbjct: 30 acgagcatgtatcatttcagtgagcatatacctcctacgagggaaagcaggagtttgagc 89
Query: 83 gaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaagataggctactc 142
||||||||||| ||||||||| || ||||||||||||||| |||||| || | | |||||
Sbjct: 90 gaagctcacaggaacaacagccagctgcagaagtggtgcatgaaacaggacaagttactc 149
Query: 143 atcaagtgcttcaaggccatcaagtttctgactgacaagctaagctgctcctcttc 198
||||||| | | ||| ||||||||||||| ||||||| ||||||||||||||
Sbjct: 150 gccaagtgccttagggctatcaagtttctgaagaacaagctcagctgctcctcttc 205
>RF00893;MIR854;AB046434.1/16922-16702 3702:Arabidopsis thaliana
(thale cress)
Length = 221
Score = 151 bits (76), Expect = 4e-36
Identities = 148/172 (86%)
Strand = Plus / Plus
Query: 27 gcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagcgaag 86
||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 34 gcatgtatcattttagtgaacatgtacctccagcgagggaaagcaagagcttgagtgaag 93
Query: 87 ctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaagataggctactcatca 146
|||| || || || | |||| || |||||||||||||||| || || | |||||||| ||
Sbjct: 94 ctcataggaataaaaacaagctgtagaagtggtgcaagaagcaggacaagctactcacca 153
Query: 147 agtgcttcaaggccatcaagtttctgactgacaagctaagctgctcctcttc 198
||||| ||||| | |||||||||||||| || ||||| |||| ||||||||
Sbjct: 154 agtgcctcaagactatcaagtttctgacagataagctgagctattcctcttc 205
>RF00893;MIR854;AC006250.4/99478-99697 3702:Arabidopsis thaliana
(thale cress)
Length = 220
Score = 145 bits (73), Expect = 3e-34
Identities = 112/125 (89%)
Strand = Plus / Plus
Query: 8 gaggaggagtacgatacgagcatgtatcatttcagtgagcatgtacctccagcgagggag 67
|||||| |||| ||| | ||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 14 gaggagaagtatgattcaagcatgtatcatttcagtgagcatgtagctccagcgagagag 73
Query: 68 agcaagagcttgagcgaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaa 127
|| |||| |||||| ||||||||||||||||| | |||||| |||||||||||||||||
Sbjct: 74 agtaagaacttgagtgaagctcacagaaacaataacaagttacagaagtggtgcaagaag 133
Query: 128 caaga 132
|||||
Sbjct: 134 caaga 138
>RF00893;MIR854;AB062093.1/13385-13190 3702:Arabidopsis thaliana
(thale cress)
Length = 196
Score = 135 bits (68), Expect = 3e-31
Identities = 101/112 (90%)
Strand = Plus / Plus
Query: 23 acgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagc 82
|||||||||||||||||||| |||| | |||||||| || |||| |||||||| ||||||
Sbjct: 30 acgagcatgtatcatttcagcgagcttatacctccatcgcgggaaagcaagagtttgagc 89
Query: 83 gaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaagata 134
|||||||| ||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct: 90 gaagctcatagaaacaacagcaagctgcagaagtggtacaagaaacatgata 141
>RF00893;MIR854;AP002067.2/32725-32486 3702:Arabidopsis thaliana
(thale cress)
Length = 240
Score = 131 bits (66), Expect = 4e-30
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 25 gagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagcga 84
|||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 51 gagcatgtatcactttagagagcatgtacctccagcgagggagagcaagagcttgagtga 110
Query: 85 agctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaagata 134
||||| |||||||||| || |||| ||||||||||||| ||||| ||||
Sbjct: 111 ggctcatagaaacaacatcatgttgtagaagtggtgcaaaaaacatgata 160
>RF00893;MIR854;AL138645.1/66847-66627 3702:Arabidopsis thaliana
(thale cress)
Length = 221
Score = 129 bits (65), Expect = 2e-29
Identities = 137/161 (85%)
Strand = Plus / Plus
Query: 23 acgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagc 82
|||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||||||
Sbjct: 30 acgagcatgtatcatttcagcgagcatatacctccatcgagggaaagcaagagcttgagt 89
Query: 83 gaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaagataggctactc 142
|||||||| || ||||| || || |||||||||||||||| || || || | ||| |||
Sbjct: 90 gaagctcataggaacaatagtaaactgcagaagtggtgcaaaaagcaggacaagctgctc 149
Query: 143 atcaagtgcttcaaggccatcaagtttctgactgacaagct 183
|||||| |||||| | |||||||||||||| || |||||
Sbjct: 150 gccaagtgtttcaagactatcaagtttctgacagataagct 190
>RF00893;MIR854;AC011621.10/80268-80048 3702:Arabidopsis thaliana
(thale cress)
Length = 221
Score = 109 bits (55), Expect = 2e-23
Identities = 142/171 (83%)
Strand = Plus / Plus
Query: 13 ggagtacgatacgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaa 72
||||| ||| || ||||||||||| || |||| ||||||||||||||||| |||||||
Sbjct: 20 ggagttcgacactagcatgtatcactttggtgaagatgtacctccagcgaggcagagcaa 79
Query: 73 gagcttgagcgaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaaga 132
|||||||| ||||||||| | ||||| || || |||||||||||||||||||| || ||
Sbjct: 80 gagcttgaccgaagctcataagaacaaaagtaaattgcagaagtggtgcaagaagcagga 139
Query: 133 taggctactcatcaagtgcttcaaggccatcaagtttctgactgacaagct 183
| | | ||| |||||| |||||||| |||||| ||||||| || |||||
Sbjct: 140 caagttgctcgccaagtgtttcaaggctatcaagcttctgacagataagct 190
>RF00893;MIR854;AC011621.10/70824-71044 3702:Arabidopsis thaliana
(thale cress)
Length = 221
Score = 105 bits (53), Expect = 2e-22
Identities = 134/161 (83%)
Strand = Plus / Plus
Query: 13 ggagtacgatacgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaa 72
||||| ||| || |||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct: 20 ggagttcgacactagcatgtatcattttgatgaacatgtacctctggcgagggagagcaa 79
Query: 73 gagcttgagcgaagctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaaga 132
||||||||| |||||||| || ||||||| ||| |||||||||| |||||||| || ||
Sbjct: 80 gagcttgagtgaagctcataggaacaacaataagctgcagaagtgttgcaagaagcagga 139
Query: 133 taggctactcatcaagtgcttcaaggccatcaagtttctga 173
| || ||| ||||||||| ||| | |||||||||||||
Sbjct: 140 caagcggctcgccaagtgctttaagactatcaagtttctga 180
>RF00893;MIR854;AL391731.1/32790-33015 3702:Arabidopsis thaliana
(thale cress)
Length = 226
Score = 93.7 bits (47), Expect = 9e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 23 acgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagc 82
|||||||||||||||||||| |||||| |||||||| ||||||| |||||||| ||||||
Sbjct: 30 acgagcatgtatcatttcagcgagcatatacctccatcgagggaaagcaagagtttgagc 89
Query: 83 gaagctc 89
|||||||
Sbjct: 90 gaagctc 96
>RF00893;MIR854;AADC01040396.1/585-804 9606:Homo sapiens (human)
Length = 220
Score = 87.7 bits (44), Expect = 6e-17
Identities = 94/111 (84%)
Strand = Plus / Plus
Query: 13 ggagtacgatacgagcatgtatcatttcagtgagcatgtacctccagcgagggagagcaa 72
||||| ||| || ||||||||||| || |||| ||||| |||||| | |||||||||||
Sbjct: 20 ggagttcgacactagcatgtatcaatttggtgaacatgtgcctccancaagggagagcaa 79
Query: 73 gagcttgagcgaagctcacagaaacaacagcaagttgcagaagtggtgcaa 123
||||||||| |||||||| || |||||||| || |||| |||||||||||
Sbjct: 80 gagcttgagtgaagctcataggaacaacagtaaactgcaaaagtggtgcaa 130
>RF00893;MIR854;AF080121.1/13749-13959 3702:Arabidopsis thaliana
(thale cress)
Length = 211
Score = 75.8 bits (38), Expect = 2e-13
Identities = 138/173 (79%), Gaps = 10/173 (5%)
Strand = Plus / Plus
Query: 26 agcatgtatcatttcagtgagcatgtacctccagcgagggagagcaagagcttgagcgaa 85
||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 33 agcatatatcattgtagtgaatatgtacctccagcgagggagagcaagagcttgag---- 88
Query: 86 gctcacagaaacaacagcaagttgcagaagtggtgcaagaaacaagataggctactcatc 145
| ||||||| |||| | |||||||||||||||||||| || | ||||||| |
Sbjct: 89 ------tgtaacaacaacaagctacagaagtggtgcaagaaacaggacaagctactcgcc 142
Query: 146 aagtgcttcaaggccatcaagtttctgactgacaagctaagctgctcctcttc 198
||||||||||| | |||||||| || | || ||| | ||||||||||||||
Sbjct: 143 aagtgcttcaaaactatcaagttcctaatagataagttgagctgctcctcttc 195
