miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47609_ath-miRf10509-akr:pmrd
Length = 108
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 gaggaagcagtctctcgcaatatttgcgagggattagcaacgttcgtccgtggtgtagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gaggaagcagtctctcgcaatatttgcgagggattagcaacgttcgtccgtggtgtagta 61
Query: 61 aagtacttgcaattccctcgcaaatttgcgagggattcgttccctc 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aagtacttgcaattccctcgcaaatttgcgagggattcgttccctc 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 74 tccctcgcaaatttgcgaggga 95
||||||||||||||||||||||
Sbjct: 96 tccctcgcaaatttgcgaggga 75
>47908_ath-miRf10808-akr:pmrd
Length = 101
Score = 129 bits (65), Expect = 4e-31
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 3 ggaagcagtctctcgcaatatttgcgagggattagcaacgttcgtccgtggtgtagtaaa 62
|||||||||||||||||||||||||||||||||||||| || |||||||||| | | |||
Sbjct: 1 ggaagcagtctctcgcaatatttgcgagggattagcaatgtgcgtccgtggtcttgcaaa 60
Query: 63 gtacttgcaattccctcgcaaatttgcgagggattcgttcc 103
|| ||||||||||||||||||||||||||||||| ||||
Sbjct: 61 atatctgcaattccctcgcaaatttgcgagggattccttcc 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 74 tccctcgcaaatttgcgaggga 95
||||||||||||||||||||||
Sbjct: 93 tccctcgcaaatttgcgaggga 72
>47640_ath-miRf10540-akr:pmrd
Length = 106
Score = 115 bits (58), Expect = 7e-27
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 1 gaggaagcagtctctcgcaatatttgcgagggattagcaacgttcgtccgtggtgtagta 60
|||||| ||||||||||||| |||||||||||||| ||||||| |||||||| | ||| |
Sbjct: 1 gaggaaacagtctctcgcaagatttgcgagggatttgcaacgtgcgtccgtgttctagaa 60
Query: 61 aagtacttgcaattccctcgcaaatttgcgagggattcgttccctc 106
|| | | |||||||||||||||||||||||||||||| |||||||
Sbjct: 61 aaatgcctgcaattccctcgcaaatttgcgagggattacttccctc 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 74 tccctcgcaaatttgcgaggga 95
||||||||||||||||||||||
Sbjct: 95 tccctcgcaaatttgcgaggga 74
>47641_ath-miRf10541-akr:pmrd
Length = 89
Score = 105 bits (53), Expect = 6e-24
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 9 agtctctcgcaatatttgcgagggattagcaacgttcgtccgtggtgtagtaaagtactt 68
|||||||||||| |||||||||||||| ||||||| |||||||| | ||| ||| | | |
Sbjct: 1 agtctctcgcaagatttgcgagggatttgcaacgtgcgtccgtgttctagaaaaatgcct 60
Query: 69 gcaattccctcgcaaatttgcgagggatt 97
|||||||||||||||||||||||||||||
Sbjct: 61 gcaattccctcgcaaatttgcgagggatt 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 74 tccctcgcaaatttgcgaggga 95
||||||||||||||||||||||
Sbjct: 87 tccctcgcaaatttgcgaggga 66
>48195_ath-miRf11095-akr:pmrd
Length = 122
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 65 acttgcaattccctcgcaaatttgcgagggatt 97
||||||||||| |||||||||||||||| ||||
Sbjct: 73 acttgcaattctctcgcaaatttgcgagagatt 105
>47361_ath-miRf10261-akr:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 ttccctcgcaaatttgcgag 92
||||||||||||||||||||
Sbjct: 15 ttccctcgcaaatttgcgag 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 64 tacttgcaattccctcgcaaatttgcga 91
|||| |||| ||||||||||||||||||
Sbjct: 109 tactcgcaactccctcgcaaatttgcga 82
