miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48258_ath-miRf11158-akr:pmrd
Length = 101
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 atcgacaccctgttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcgtggctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 atcgacaccctgttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcgtggctgg 67
Query: 61 tgtcgatcgacacccagctgtgtcggt 87
|||||||||||||||||||||||||||
Sbjct: 68 tgtcgatcgacacccagctgtgtcggt 94
>47704_ath-miRf10604-akr:pmrd
Length = 87
Score = 133 bits (67), Expect = 2e-32
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 1 atcgacaccctgttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcgtggctgg 60
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 atcgacaccctattggtgtcggtcgacactgtcgcgttctgtagtgtctaccgtggctgg 60
Query: 61 tgtcgatcgacacccagctgtgtcggt 87
||||||||||||||||| ||||||||
Sbjct: 61 tgtcgatcgacacccagtagtgtcggt 87
>48068_ath-miRf10968-akr:pmrd
Length = 103
Score = 65.9 bits (33), Expect = 4e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 25 gacactgtcgcgttctgtagtgtctgtcgtggctggtgtcgatcgacac 73
|||||||||| ||||| |||||||||| ||||||||||||||||||||
Sbjct: 42 gacactgtcgggttctatagtgtctgtgttggctggtgtcgatcgacac 90
>47455_ath-miRf10355-akr:pmrd
Length = 108
Score = 65.9 bits (33), Expect = 4e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 25 gacactgtcgcgttctgtagtgtctgtcgtggctggtgtcgatcgacac 73
|||||||||| ||||| |||||||||| ||||||||||||||||||||
Sbjct: 47 gacactgtcgggttctatagtgtctgtgttggctggtgtcgatcgacac 95
>47454_ath-miRf10354-akr:pmrd
Length = 108
Score = 65.9 bits (33), Expect = 4e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 25 gacactgtcgcgttctgtagtgtctgtcgtggctggtgtcgatcgacac 73
|||||||||| ||||| |||||||||| ||||||||||||||||||||
Sbjct: 47 gacactgtcgggttctatagtgtctgtgttggctggtgtcgatcgacac 95
>48109_ath-miRf11009-akr:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 acaccctgttggtgtcggtcgacac 29
|||||| ||||||||||||||||||
Sbjct: 83 acacccagttggtgtcggtcgacac 107
>47826_ath-miRf10726-akr:pmrd
Length = 75
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 atcgacaccctgttggtgtcg 21
|||||||||||||||||||||
Sbjct: 61 atcgacaccctgttggtgtcg 41
>48231_ath-miRf11131-akr:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 58 tggtgtcgatcgacacccag 77
||||||||||||||||||||
Sbjct: 29 tggtgtcgatcgacacccag 10
>47554_ath-miRf10454-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 58 tggtgtcgatcgacacccag 77
||||||||||||||||||||
Sbjct: 44 tggtgtcgatcgacacccag 25
>47224_ath-miRf10124-akr:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tggtgtcgatcgacacccag 77
||||||||||||||||||||
Sbjct: 69 tggtgtcgatcgacacccag 88
>47511_ath-miRf10411-akr:pmrd
Length = 144
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 58 tggtgtcgatcgacaccca 76
|||||||||||||||||||
Sbjct: 34 tggtgtcgatcgacaccca 16
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57 ctggtgtcgatcgacaccc 75
|||||||||||||||||||
Sbjct: 111 ctggtgtcgatcgacaccc 129
>47509_ath-miRf10409-akr:pmrd
Length = 112
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 59 ggtgtcgatcgacacccag 77
|||||||||||||||||||
Sbjct: 70 ggtgtcgatcgacacccag 88
>47400_ath-miRf10300-akr:pmrd
Length = 121
Score = 38.2 bits (19), Expect = 0.001
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 13 ttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcgtggctggtgtcgatcgaca 72
|||||||||||||| |||||| ||||| ||| ||||| | ||||| ||||||||||
Sbjct: 29 ttggtgtcggtcgatactgtctgtttctgcagtatctgtgttcactggtatcgatcgaca 88
Query: 73 cccagctgtgtcggt 87
|| || ||||||||
Sbjct: 89 ccaagtagtgtcggt 103
>47330_ath-miRf10230-akr:pmrd
Length = 112
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 59 ggtgtcgatcgacacccag 77
|||||||||||||||||||
Sbjct: 70 ggtgtcgatcgacacccag 88
>47198_ath-miRf10098-akr:pmrd
Length = 140
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 57 ctggtgtcgatcgacaccc 75
|||||||||||||||||||
Sbjct: 32 ctggtgtcgatcgacaccc 14
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58 tggtgtcgatcgacaccca 76
|||||||||||||||||||
Sbjct: 109 tggtgtcgatcgacaccca 127
>47022_ath-miR401:pmrd
Length = 250
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 3 cgacaccctgttggtgtcggtcgacac 29
|||||| || |||||||||||||||||
Sbjct: 142 cgacacactcttggtgtcggtcgacac 116
