miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48257_ath-miRf11157-akr:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 8 atcgacaccctgttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcgtggctgg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcgacaccctgttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcgtggctgg 60
Query: 68 tgtcgatcgacacccagctgtgtcggt 94
|||||||||||||||||||||||||||
Sbjct: 61 tgtcgatcgacacccagctgtgtcggt 87
>47704_ath-miRf10604-akr:pmrd
Length = 87
Score = 133 bits (67), Expect = 3e-32
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 8 atcgacaccctgttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcgtggctgg 67
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 atcgacaccctattggtgtcggtcgacactgtcgcgttctgtagtgtctaccgtggctgg 60
Query: 68 tgtcgatcgacacccagctgtgtcggt 94
||||||||||||||||| ||||||||
Sbjct: 61 tgtcgatcgacacccagtagtgtcggt 87
>48068_ath-miRf10968-akr:pmrd
Length = 103
Score = 79.8 bits (40), Expect = 3e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcg 60
||||||||||||||| | ||| ||| ||| |||||||||| ||||| ||||||||||
Sbjct: 11 ggtgtcgatcgacacacaattgatgtaggttgacactgtcgggttctatagtgtctgtgt 70
Query: 61 tggctggtgtcgatcgacac 80
||||||||||||||||||||
Sbjct: 71 tggctggtgtcgatcgacac 90
>47455_ath-miRf10355-akr:pmrd
Length = 108
Score = 79.8 bits (40), Expect = 3e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcg 60
||||||||||||||| | ||| ||| ||| |||||||||| ||||| ||||||||||
Sbjct: 16 ggtgtcgatcgacacacaattgatgtaggttgacactgtcgggttctatagtgtctgtgt 75
Query: 61 tggctggtgtcgatcgacac 80
||||||||||||||||||||
Sbjct: 76 tggctggtgtcgatcgacac 95
>47454_ath-miRf10354-akr:pmrd
Length = 108
Score = 79.8 bits (40), Expect = 3e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcg 60
||||||||||||||| | ||| ||| ||| |||||||||| ||||| ||||||||||
Sbjct: 16 ggtgtcgatcgacacacaattgatgtaggttgacactgtcgggttctatagtgtctgtgt 75
Query: 61 tggctggtgtcgatcgacac 80
||||||||||||||||||||
Sbjct: 76 tggctggtgtcgatcgacac 95
>47400_ath-miRf10300-akr:pmrd
Length = 121
Score = 65.9 bits (33), Expect = 5e-12
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacactgtcgcgttctgtagtgtctgtcg 60
||||||||||||||| | |||||||||||||| |||||| ||||| ||| |||||
Sbjct: 10 ggtgtcgatcgacacattattggtgtcggtcgatactgtctgtttctgcagtatctgtgt 69
Query: 61 tggctggtgtcgatcgacacccagctgtgtcggtcgacact 101
| ||||| |||||||||||| || |||||||||||||||
Sbjct: 70 tcactggtatcgatcgacaccaagtagtgtcggtcgacact 110
>48109_ath-miRf11009-akr:pmrd
Length = 116
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacac 36
|||||||||| |||||| ||||||||||||||||||
Sbjct: 72 ggtgtcgatcaacacccagttggtgtcggtcgacac 107
Score = 42.1 bits (21), Expect = 8e-05
Identities = 34/37 (91%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 65 tggtgtcgatcgacacccagct-gtgtcggtcgacac 100
||||||||||| |||||||| | ||||||||||||||
Sbjct: 71 tggtgtcgatcaacacccagttggtgtcggtcgacac 107
>47554_ath-miRf10454-akr:pmrd
Length = 112
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacac 36
||||||||||||||||| |||||||||| |||||||
Sbjct: 43 ggtgtcgatcgacacccagttggtgtcgctcgacac 8
Score = 42.1 bits (21), Expect = 8e-05
Identities = 34/37 (91%), Gaps = 1/37 (2%)
Strand = Plus / Minus
Query: 65 tggtgtcgatcgacacccagct-gtgtcggtcgacac 100
|||||||||||||||||||| | |||||| |||||||
Sbjct: 44 tggtgtcgatcgacacccagttggtgtcgctcgacac 8
>47509_ath-miRf10409-akr:pmrd
Length = 112
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacac 36
||||||||||||||||| |||||||||| |||||||
Sbjct: 70 ggtgtcgatcgacacccagttggtgtcgctcgacac 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 66 ggtgtcgatcgacacccagct-gtgtcggtcgacac 100
||||||||||||||||||| | |||||| |||||||
Sbjct: 70 ggtgtcgatcgacacccagttggtgtcgctcgacac 105
>47330_ath-miRf10230-akr:pmrd
Length = 112
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacac 36
||||||||||||||||| |||||||||| |||||||
Sbjct: 70 ggtgtcgatcgacacccagttggtgtcgctcgacac 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 66 ggtgtcgatcgacacccagct-gtgtcggtcgacac 100
||||||||||||||||||| | |||||| |||||||
Sbjct: 70 ggtgtcgatcgacacccagttggtgtcgctcgacac 105
>47224_ath-miRf10124-akr:pmrd
Length = 111
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacac 36
||||||||||||||||| |||||||||| |||||||
Sbjct: 70 ggtgtcgatcgacacccagttggtgtcgctcgacac 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 34/37 (91%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 65 tggtgtcgatcgacacccagct-gtgtcggtcgacac 100
|||||||||||||||||||| | |||||| |||||||
Sbjct: 69 tggtgtcgatcgacacccagttggtgtcgctcgacac 105
>47826_ath-miRf10726-akr:pmrd
Length = 75
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 2 gtgtcgatcgacaccctgttggtgtcg 28
|||||||||||||||||||||||||||
Sbjct: 67 gtgtcgatcgacaccctgttggtgtcg 41
>48231_ath-miRf11131-akr:pmrd
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 ggtgtcgatcgacaccctgttggtgtcg 28
||||||||||||||||| ||||||||||
Sbjct: 28 ggtgtcgatcgacacccagttggtgtcg 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 tggtgtcgatcgacacccag 84
||||||||||||||||||||
Sbjct: 29 tggtgtcgatcgacacccag 10
>47692_ath-miRf10592-akr:pmrd
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacac 36
|||||||||||||||| |||||||||| |||||||
Sbjct: 17 ggtgtcgatcgacacctagttggtgtcgctcgacac 52
>47088_ath-miR855:pmrd
Length = 272
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2 gtgtcgatcgacaccctgttggtgtcggtcgacac 36
|||||||||||||| || ||||||||| |||||||
Sbjct: 64 gtgtcgatcgacacactcttggtgtcgatcgacac 98
>47022_ath-miR401:pmrd
Length = 250
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2 gtgtcgatcgacaccctgttggtgtcggtcgacac 36
||||||| |||||| || |||||||||||||||||
Sbjct: 150 gtgtcgagcgacacactcttggtgtcggtcgacac 116
