miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47933_ath-miRf10833-akr:pmrd
Length = 96
Score = 111 bits (56), Expect = 9e-26
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 1 tccagtgttgatcgacactagaggggtatcgatcgacatcgtcgtattgagtcgtcttag 60
|||||||| |||||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct: 1 tccagtgtcgatcgacactagaggggtatcggtcgacaccgtcgtattgagtcgtctctg 60
Query: 61 aaaagagtgtcccatagggtgtcgatcgacactgga 96
| || || ||||| || |||||||||||||||||||
Sbjct: 61 agaaaagggtcccgtatggtgtcgatcgacactgga 96
>47388_ath-miRf10288-akr:pmrd
Length = 96
Score = 111 bits (56), Expect = 9e-26
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 1 tccagtgttgatcgacactagaggggtatcgatcgacatcgtcgtattgagtcgtcttag 60
|||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |
Sbjct: 1 tccagtgtcgatcgacactagaggggtatcgatcgacaccgtcatattgagtcgtctctg 60
Query: 61 aaaagagtgtcccatagggtgtcgatcgacactgga 96
| || || ||||| || |||||||||||||||||||
Sbjct: 61 agaaaagagtcccgtatggtgtcgatcgacactgga 96
>47324_ath-miRf10224-akr:pmrd
Length = 107
Score = 111 bits (56), Expect = 9e-26
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 1 tccagtgttgatcgacactagaggggtatcgatcgacatcgtcgtattgagtcgtcttag 60
|||||||| |||||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct: 8 tccagtgtcgatcgacactagaggggtatcggtcgacaccgtcgtattgagtcgtctctg 67
Query: 61 aaaagagtgtcccatagggtgtcgatcgacactgga 96
| || || ||||| || |||||||||||||||||||
Sbjct: 68 agaaaagggtcccgtatggtgtcgatcgacactgga 103
>47679_ath-miRf10579-akr:pmrd
Length = 83
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 29 tcgatcgacatcgtcgtattgagtcgtcttagaaaagagtgtcccatagggtgtcgatcg 88
|||||||||| |||||||| || |||||||||| |||||||| |||||||||||||||||
Sbjct: 71 tcgatcgacaccgtcgtatggaatcgtcttagagaagagtgttccatagggtgtcgatcg 12
Query: 89 acactgga 96
||||||||
Sbjct: 11 acactgga 4
>48212_ath-miRf11112-akr:pmrd
Length = 96
Score = 91.7 bits (46), Expect = 9e-20
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 4 agtgttgatcgacactagaggggtatcgatcgacatcgtcgtattgagtcgtcttagaaa 63
||||| |||||||||||||||||||||||| |||| ||||||||| |||||||| || |
Sbjct: 4 agtgtcgatcgacactagaggggtatcgattgacaccgtcgtatttagtcgtctctgaga 63
Query: 64 agagtgtcccatagggtgtcgatcgacact 93
|||| |||| || ||||||||||||||||
Sbjct: 64 agagcatcccctatggtgtcgatcgacact 93
>47920_ath-miRf10820-akr:pmrd
Length = 112
Score = 91.7 bits (46), Expect = 9e-20
Identities = 79/90 (87%)
Strand = Plus / Minus
Query: 4 agtgttgatcgacactagaggggtatcgatcgacatcgtcgtattgagtcgtcttagaaa 63
||||| |||||||||||||||||||||||| |||| ||||||||| |||||||| || |
Sbjct: 101 agtgtcgatcgacactagaggggtatcgattgacaccgtcgtatttagtcgtctctgaga 42
Query: 64 agagtgtcccatagggtgtcgatcgacact 93
|||| |||| || ||||||||||||||||
Sbjct: 41 agagcatcccctatggtgtcgatcgacact 12
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 5 gtgttgatcgacactagaggggtatc 30
|||| |||||||||||||||||||||
Sbjct: 26 gtgtcgatcgacactagaggggtatc 1
>47629_ath-miRf10529-akr:pmrd
Length = 108
Score = 91.7 bits (46), Expect = 9e-20
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 4 agtgttgatcgacactagaggggtatcgatcgacatcgtcgtattgagtcgtcttagaaa 63
||||| |||||||||||||||||||||||| |||| ||||||||| |||||||| || |
Sbjct: 11 agtgtcgatcgacactagaggggtatcgattgacaccgtcgtatttagtcgtctctgaga 70
Query: 64 agagtgtcccatagggtgtcgatcgacact 93
|||| |||| || ||||||||||||||||
Sbjct: 71 agagcatcccctatggtgtcgatcgacact 100
>47364_ath-miRf10264-akr:pmrd
Length = 84
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 19 tagaggggtatcgatcgacatcgtcgtattgagtcgtcttagaaaagagtgtcccatagg 78
|||||||||||||||||||| |||||||||||||||||| || || || ||||| || |
Sbjct: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
Query: 79 gtgtcgatcgacac 92
||||||||||||||
Sbjct: 62 gtgtcgatcgacac 75
>47363_ath-miRf10263-akr:pmrd
Length = 84
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 19 tagaggggtatcgatcgacatcgtcgtattgagtcgtcttagaaaagagtgtcccatagg 78
|||||||||||||||||||| |||||||||||||||||| || || || ||||| || |
Sbjct: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
Query: 79 gtgtcgatcgacac 92
||||||||||||||
Sbjct: 62 gtgtcgatcgacac 75
>48116_ath-miRf11016-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 8e-11
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 19 tagaggggtatcgatcgacatcgtcgtattgagtcgtcttagaaaagagtgtcccatagg 78
|||||||||||||||||||| | ||||| || |||||| ||| ||||| ||||| ||||
Sbjct: 1 tagaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtagg 60
Query: 79 gtgtc-gatcgacactgga 96
||||| |||||||| ||||
Sbjct: 61 gtgtcagatcgacagtgga 79
>47506_ath-miRf10406-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 8e-11
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 19 tagaggggtatcgatcgacatcgtcgtattgagtcgtcttagaaaagagtgtcccatagg 78
|||||||||||||||||||| | ||||| || |||||| ||| ||||| ||||| ||||
Sbjct: 1 tagaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtagg 60
Query: 79 gtgtc-gatcgacactgga 96
||||| |||||||| ||||
Sbjct: 61 gtgtcagatcgacagtgga 79
>47190_ath-miRf10090-akr:pmrd
Length = 101
Score = 60.0 bits (30), Expect = 3e-10
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 20 agaggggtatcgatcgacatcgtcgtattgagtcgtcttagaaaagagtgtcccataggg 79
||||||||||||||||||| | ||||| || |||||| ||| ||||| ||||| |||||
Sbjct: 101 agaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtaggg 42
Query: 80 tgtc-gatcgacactgga 96
|||| |||||||| ||||
Sbjct: 41 tgtcagatcgacagtgga 24
>47836_ath-miRf10736-akr:pmrd
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 21 gaggggtatcgatcgacatcgtcgtattgagtcgtcttagaaaagagtgtcccatagggt 80
|||||||||||||||||| | ||||| || |||||| ||| ||||| ||||| ||||||
Sbjct: 99 gaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtagggt 40
Query: 81 gtc-gatcgacactgga 96
||| |||||||| ||||
Sbjct: 39 gtcagatcgacagtgga 23
>47431_ath-miRf10331-akr:pmrd
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 gatcgacactagaggggtatcgatcgaca 38
||||||||||||||| |||||||||||||
Sbjct: 1 gatcgacactagaggtgtatcgatcgaca 29
