miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48297_ath-miRf11197-akr:pmrd
Length = 162
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 acacttagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacac 91
Query: 61 tttacatttgtatactaaaagtgatgtacaatccaagtgt 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 tttacatttgtatactaaaagtgatgtacaatccaagtgt 131
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 66 atttgtatactaaaagtgatgtacaatccaagtgt 100
||||||| |||||||||||||||||||| ||||||
Sbjct: 66 atttgtacactaaaagtgatgtacaatctaagtgt 32
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||| |||||||||||||||||||| |||||||
Sbjct: 131 acacttggattgtacatcacttttagtatacaaat 97
>48080_ath-miRf10980-akr:pmrd
Length = 100
Score = 174 bits (88), Expect = 8e-45
Identities = 97/100 (97%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacac 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 acacttggattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacat 41
Query: 61 tttacatttgtatactaaaagtgatgtacaatccaagtgt 100
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 40 tttacatttgtacactaaaagtgatgtacaatccaagtgt 1
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||| ||||||||||||||||||||||||||||
Sbjct: 1 acacttggattgtacatcacttttagtgtacaaat 35
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 66 atttgtatactaaaagtgatgtacaatccaagtgt 100
||||||| |||||||||||||||||||||||||||
Sbjct: 66 atttgtacactaaaagtgatgtacaatccaagtgt 100
>48079_ath-miRf10979-akr:pmrd
Length = 162
Score = 174 bits (88), Expect = 8e-45
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacac 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 acacttagattgtacaccacttttagtgtacaaatatatataaaaatacacagcgtacac 91
Query: 61 tttacatttgtatactaaaagtgatgtacaatccaagtgt 100
|||||||||||| ||||||||||||||| |||||||||||
Sbjct: 92 tttacatttgtacactaaaagtgatgtataatccaagtgt 131
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||| |||| |||||||||||||||||||||||
Sbjct: 131 acacttggattatacatcacttttagtgtacaaat 97
>47793_ath-miRf10693-akr:pmrd
Length = 102
Score = 174 bits (88), Expect = 8e-45
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacac 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 acacttggattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacat 61
Query: 61 tttacatttgtatactaaaagtgatgtacaatccaagtgt 100
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 62 tttacatttgtacactaaaagtgatgtacaatccaagtgt 101
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 66 atttgtatactaaaagtgatgtacaatccaagtgt 100
||||||| |||||||||||||||||||||||||||
Sbjct: 36 atttgtacactaaaagtgatgtacaatccaagtgt 2
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||| ||||||||||||||||||||||||||||
Sbjct: 101 acacttggattgtacatcacttttagtgtacaaat 67
>47792_ath-miRf10692-akr:pmrd
Length = 162
Score = 174 bits (88), Expect = 8e-45
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacac 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 acacttggattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacat 91
Query: 61 tttacatttgtatactaaaagtgatgtacaatccaagtgt 100
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 92 tttacatttgtacactaaaagtgatgtacaatccaagtgt 131
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 66 atttgtatactaaaagtgatgtacaatccaagtgt 100
||||||| |||||||||||||||||||||||||||
Sbjct: 66 atttgtacactaaaagtgatgtacaatccaagtgt 32
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||| ||||||||||||||||||||||||||||
Sbjct: 131 acacttggattgtacatcacttttagtgtacaaat 97
>48017_ath-miRf10917-akr:pmrd
Length = 96
Score = 170 bits (86), Expect = 1e-43
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 5 ttagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacacttta 64
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3 ttagattgtacatcacttttagtgtacaaatatatataaaaatacacagtgtacacttta 62
Query: 65 catttgtatactaaaagtgatgtacaatccaagt 98
|||||||| |||||||||||||||||||||||||
Sbjct: 63 catttgtacactaaaagtgatgtacaatccaagt 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 3 acttagattgtacatcacttttagtgtacaaat 35
|||| ||||||||||||||||||||||||||||
Sbjct: 96 acttggattgtacatcacttttagtgtacaaat 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 66 atttgtatactaaaagtgatgtacaatc 93
||||||| ||||||||||||||||||||
Sbjct: 33 atttgtacactaaaagtgatgtacaatc 6
>48140_ath-miRf11040-akr:pmrd
Length = 100
Score = 167 bits (84), Expect = 2e-42
Identities = 96/100 (96%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacac 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acacttggattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacat 60
Query: 61 tttacatttgtatactaaaagtgatgtacaatccaagtgt 100
|||| ||||||| |||||||||||||||||||||||||||
Sbjct: 61 tttatatttgtacactaaaagtgatgtacaatccaagtgt 100
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaatata 38
|||||| |||||||||||||||||||||||||||||||
Sbjct: 100 acacttggattgtacatcacttttagtgtacaaatata 63
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 66 atttgtatactaaaagtgatgtacaatccaagtgt 100
||||||| |||||||||||||||||||||||||||
Sbjct: 35 atttgtacactaaaagtgatgtacaatccaagtgt 1
>47849_ath-miRf10749-akr:pmrd
Length = 102
Score = 167 bits (84), Expect = 2e-42
Identities = 96/100 (96%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacac 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 acacttggattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacat 42
Query: 61 tttacatttgtatactaaaagtgatgtacaatccaagtgt 100
|||| ||||||| |||||||||||||||||||||||||||
Sbjct: 41 tttatatttgtacactaaaagtgatgtacaatccaagtgt 2
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaatata 38
|||||| |||||||||||||||||||||||||||||||
Sbjct: 2 acacttggattgtacatcacttttagtgtacaaatata 39
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 66 atttgtatactaaaagtgatgtacaatccaagtgt 100
||||||| |||||||||||||||||||||||||||
Sbjct: 67 atttgtacactaaaagtgatgtacaatccaagtgt 101
>47742_ath-miRf10642-akr:pmrd
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Minus
Query: 6 tagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacactttac 65
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 90 tagattgtacatcacttttagtgtacaaatatatataaaaatacacagtgtacactttac 31
Query: 66 atttgtatactaaaagtgatgtacaatcca 95
||||||| ||||||||||||||||||||||
Sbjct: 30 atttgtacactaaaagtgatgtacaatcca 1
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 gattgtacatcacttttagtgtacaaat 35
||||||||||||||||||||||||||||
Sbjct: 3 gattgtacatcacttttagtgtacaaat 30
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 atttgtatactaaaagtgatgtacaatc 93
||||||| ||||||||||||||||||||
Sbjct: 61 atttgtacactaaaagtgatgtacaatc 88
>48157_ath-miRf11057-akr:pmrd
Length = 101
Score = 161 bits (81), Expect = 1e-40
Identities = 97/101 (96%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaa-tacacagcgtaca 59
|||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 101 acacttagattgtacaccacttttagtgtacaaatgtatataaaaaatacacagcgtaca 42
Query: 60 ctttacatttgtatactaaaagtgatgtacaatccaagtgt 100
||||||||||||| |||||||||||||||||||||||||||
Sbjct: 41 ctttacatttgtacactaaaagtgatgtacaatccaagtgt 1
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||| ||||||||||||||||||||||||||||
Sbjct: 1 acacttggattgtacatcacttttagtgtacaaat 35
>48005_ath-miRf10905-akr:pmrd
Length = 163
Score = 161 bits (81), Expect = 1e-40
Identities = 97/101 (96%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacac 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 acacttagattgtacaccacttttagtgtacaaatatatataaaaatacacagcgtacac 91
Query: 61 tttacatttgtatactaaaagtgat-gtacaatccaagtgt 100
|||| ||||||| |||||||||||| |||||||||||||||
Sbjct: 92 tttatatttgtacactaaaagtgatagtacaatccaagtgt 132
Score = 54.0 bits (27), Expect = 2e-08
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 1 acacttagattgtac-atcacttttagtgtacaaatata 38
|||||| |||||||| |||||||||||||||||||||||
Sbjct: 132 acacttggattgtactatcacttttagtgtacaaatata 94
>47860_ath-miRf10760-akr:pmrd
Length = 163
Score = 161 bits (81), Expect = 1e-40
Identities = 97/101 (96%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaa-atacacagcgtaca 59
|||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 32 acacttagattgtacaccacttttagtgtacaaatgtatataaaaaatacacagcgtaca 91
Query: 60 ctttacatttgtatactaaaagtgatgtacaatccaagtgt 100
||||||||||||| |||||||||||||||||||||||||||
Sbjct: 92 ctttacatttgtacactaaaagtgatgtacaatccaagtgt 132
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||| ||||||||||||||||||||||||||||
Sbjct: 132 acacttggattgtacatcacttttagtgtacaaat 98
>48232_ath-miRf11132-akr:pmrd
Length = 100
Score = 159 bits (80), Expect = 5e-40
Identities = 92/96 (95%)
Strand = Plus / Minus
Query: 5 ttagattgtacatcacttttagtgtacaaatatatataaaaatacacagcgtacacttta 64
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 96 ttagattgtacaccacttttagtgtacaaatatatataaaaatatacagcgtacacttta 37
Query: 65 catttgtatactaaaagtgatgtacaatccaagtgt 100
|||||||| |||||||||||||||||||| ||||||
Sbjct: 36 catttgtacactaaaagtgatgtacaatctaagtgt 1
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||||||||||||||||||||||||||||||||
Sbjct: 1 acacttagattgtacatcacttttagtgtacaaat 35
>48190_ath-miRf11090-akr:pmrd
Length = 101
Score = 153 bits (77), Expect = 3e-38
Identities = 93/97 (95%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaa-tacacagcgtaca 59
|||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 101 acacttagattgtacaccacttttagtgtacagatatatataaaaaatacacagcgtaca 42
Query: 60 ctttacatttgtatactaaaagtgatgtacaatccaa 96
||||||||||||| |||||||||||||||||||||||
Sbjct: 41 ctttacatttgtacactaaaagtgatgtacaatccaa 5
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 gattgtacatcacttttagtgtacaaat 35
||||||||||||||||||||||||||||
Sbjct: 8 gattgtacatcacttttagtgtacaaat 35
>48249_ath-miRf11149-akr:pmrd
Length = 161
Score = 123 bits (62), Expect = 3e-29
Identities = 93/101 (92%), Gaps = 3/101 (2%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaa-tacacagcgtaca 59
|||||||||||||||| || |||||||||||| || |||||||||| |||||||||||||
Sbjct: 130 acacttagattgtacaccatttttagtgtacagatgtatataaaaaatacacagcgtaca 71
Query: 60 ctttacatttgtatactaaaagtgatgtacaatccaagtgt 100
||||||||||||| |||||||||||||| |||||||||||
Sbjct: 70 ctttacatttgtacactaaaagtgatgt--aatccaagtgt 32
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 tacatcacttttagtgtacaaat 35
|||||||||||||||||||||||
Sbjct: 42 tacatcacttttagtgtacaaat 64
>48007_ath-miRf10907-akr:pmrd
Length = 162
Score = 123 bits (62), Expect = 3e-29
Identities = 77/82 (93%)
Strand = Plus / Minus
Query: 19 acttttagtgtacaaatatatataaaaatacacagcgtacactttacatttgtatactaa 78
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 113 acttttagtgtacaaatgtatataaaaatacacagagtacactttacatttgtacactaa 54
Query: 79 aagtgatgtacaatccaagtgt 100
||||| ||||||||| ||||||
Sbjct: 53 aagtggtgtacaatctaagtgt 32
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||||||||||||| ||||||||||||||||||
Sbjct: 32 acacttagattgtacaccacttttagtgtacaaat 66
>47958_ath-miRf10858-akr:pmrd
Length = 161
Score = 123 bits (62), Expect = 3e-29
Identities = 93/101 (92%), Gaps = 3/101 (2%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaa-atacacagcgtaca 59
|||||||||||||||| || |||||||||||| || ||||||||| ||||||||||||||
Sbjct: 32 acacttagattgtacaccatttttagtgtacagatgtatataaaaaatacacagcgtaca 91
Query: 60 ctttacatttgtatactaaaagtgatgtacaatccaagtgt 100
||||||||||||| |||||||||||||| |||||||||||
Sbjct: 92 ctttacatttgtacactaaaagtgatgt--aatccaagtgt 130
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 tacatcacttttagtgtacaaat 35
|||||||||||||||||||||||
Sbjct: 120 tacatcacttttagtgtacaaat 98
>48194_ath-miRf11094-akr:pmrd
Length = 163
Score = 121 bits (61), Expect = 1e-28
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaa-atacacagcgtaca 59
|||||||| ||||||| ||||||||||| || || ||||||||| ||||||||||||||
Sbjct: 32 acacttagtttgtacaccacttttagtgatcagatgtatataaaaaatacacagcgtaca 91
Query: 60 ctttacatttgtatactaaaagtgatgtacaatccaagtgt 100
||||||||||||| | |||||||||||||||||||||||||
Sbjct: 92 ctttacatttgtacaataaaagtgatgtacaatccaagtgt 132
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||| |||||||||||||||||| |||||||||
Sbjct: 132 acacttggattgtacatcacttttattgtacaaat 98
>47901_ath-miRf10801-akr:pmrd
Length = 163
Score = 121 bits (61), Expect = 1e-28
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaa-tacacagcgtaca 59
|||||||| ||||||| ||||||||||| || || |||||||||| |||||||||||||
Sbjct: 132 acacttagtttgtacaccacttttagtgatcagatgtatataaaaaatacacagcgtaca 73
Query: 60 ctttacatttgtatactaaaagtgatgtacaatccaagtgt 100
||||||||||||| | |||||||||||||||||||||||||
Sbjct: 72 ctttacatttgtacaataaaagtgatgtacaatccaagtgt 32
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||| |||||||||||||||||| |||||||||
Sbjct: 32 acacttggattgtacatcacttttattgtacaaat 66
>47852_ath-miRf10752-akr:pmrd
Length = 103
Score = 121 bits (61), Expect = 1e-28
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 1 acacttagattgtacatcacttttagtgtacaaatatatataaaaa-tacacagcgtaca 59
|||||||| ||||||| | |||||||||||| || |||||||||| |||||||||||||
Sbjct: 102 acacttagtttgtacactatttttagtgtacagatgtatataaaaaatacacagcgtaca 43
Query: 60 ctttacatttgtatactaaaagtgatgtacaatccaagtgt 100
||||||||||| | |||||||||||||||||||||||||||
Sbjct: 42 ctttacatttgcacactaaaagtgatgtacaatccaagtgt 2
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 acacttagattgtacatcacttttagtgtacaaat 35
|||||| |||||||||||||||||||||| |||||
Sbjct: 2 acacttggattgtacatcacttttagtgtgcaaat 36
>47654_ath-miRf10554-akr:pmrd
Length = 143
Score = 46.1 bits (23), Expect = 5e-06
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 34 atatatataaaaatacacagcgtacactttacatttgtatactaaaa 80
||||||||||| ||||||| ||||||| |||||| |||| |||||||
Sbjct: 88 atatatataaatatacacaacgtacac-ttacatctgtacactaaaa 43
