miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 268 bits (135), Expect = 2e-71
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggcacgaggcccttaacttagatctatatttgattatatatatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggcacgaggcccttaacttagatctatatttgattatatatatatg 65
Query: 61 tctcttctttattcattagtctatacatgaatgatcattttacggttaatgacgtcggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tctcttctttattcattagtctatacatgaatgatcattttacggttaatgacgtcggac 125
Query: 121 caggcttcattcccc 135
|||||||||||||||
Sbjct: 126 caggcttcattcccc 140
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggcacgaggcccttaacttagatcta 40
||||||||||||||||||||||||||||||| |||||||
Sbjct: 6 ggggaatgttgtctggcacgaggcccttaacacagatcta 45
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 104 ggttaatgacgtcggaccaggcttcattcccc 135
|||| |||||||||||||||||||||||||||
Sbjct: 86 ggttgatgacgtcggaccaggcttcattcccc 117
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 105 gttaatgacgtcggaccaggcttcattcccc 135
|||| ||||||||||||||||||||||||||
Sbjct: 86 gttagtgacgtcggaccaggcttcattcccc 116
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 106 ttaatgacgtcggaccaggcttcattcccc 135
||||||| ||||||||||||||||||||||
Sbjct: 121 ttaatgatgtcggaccaggcttcattcccc 150
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 cgtcggaccaggcttcattcccc 135
|||||||||||||||||||||||
Sbjct: 109 cgtcggaccaggcttcattcccc 131
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 atgacgtcggaccaggcttcattcccc 135
|||| ||||||||||||||||||||||
Sbjct: 67 atgatgtcggaccaggcttcattcccc 93
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 cgtcggaccaggcttcattcccc 135
|||||||||||||||||||||||
Sbjct: 95 cgtcggaccaggcttcattcccc 117
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 atgacgtcggaccaggcttcattcccc 135
|||| ||||||||||||||||||||||
Sbjct: 70 atgatgtcggaccaggcttcattcccc 96
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 cgtcggaccaggcttcattcccc 135
|||||||||||||||||||||||
Sbjct: 98 cgtcggaccaggcttcattcccc 120
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 cgtcggaccaggcttcattcccc 135
|||||||||||||||||||||||
Sbjct: 106 cgtcggaccaggcttcattcccc 128
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 cgtcggaccaggcttcattcccc 135
|||||||||||||||||||||||
Sbjct: 129 cgtcggaccaggcttcattcccc 151
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 cgtcggaccaggcttcattcccc 135
|||||||||||||||||||||||
Sbjct: 123 cgtcggaccaggcttcattcccc 145
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gtcggaccaggcttcattcccc 135
||||||||||||||||||||||
Sbjct: 83 gtcggaccaggcttcattcccc 104
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gtcggaccaggcttcattcccc 135
||||||||||||||||||||||
Sbjct: 108 gtcggaccaggcttcattcccc 129
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gtcggaccaggcttcattcccc 135
||||||||||||||||||||||
Sbjct: 87 gtcggaccaggcttcattcccc 108
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gtcggaccaggcttcattcccc 135
||||||||||||||||||||||
Sbjct: 122 gtcggaccaggcttcattcccc 143
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gtcggaccaggcttcattcccc 135
||||||||||||||||||||||
Sbjct: 161 gtcggaccaggcttcattcccc 182
