miRNEST 2.0, an integrative microRNA resource :: BLAST
>48372_bna-miR390c:pmrd
Length = 128
Score = 111 bits (56), Expect = 1e-25
Identities = 107/124 (86%)
Strand = Plus / Plus
Query: 13 gtagttgagaagtagctgtaaagctcaggagggatagcgccatgtctcaccggtactata 72
||||| |||||||||||||||||||||||||||||||||||||| |||| | | ||
Sbjct: 3 gtagtagagaagtagctgtaaagctcaggagggatagcgccatgactcatcaccattact 62
Query: 73 aaatgtttgtatatctatattggcgctatccatcctgagttctatggcttcttcttgctt 132
| |||| | | ||| | || |||||||||||||||||||||| |||||||||||||||||
Sbjct: 63 atatgtctttgtatatgtaatggcgctatccatcctgagttccatggcttcttcttgctt 122
Query: 133 ttat 136
||||
Sbjct: 123 ttat 126
>46996_ath-miR390b:pmrd
Length = 120
Score = 65.9 bits (33), Expect = 8e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccatgtctcacc 63
||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 gagaaatagctataaagctcaggagggatagcgccatggctcacc 45
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 92 ttggcgctatccatcctgagttctatggcttcttctt 128
||||||||||||||||||||||| || ||||||||||
Sbjct: 84 ttggcgctatccatcctgagttccatagcttcttctt 120
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccatg 56
|||||| | |||||||||||||||||||||||||||||
Sbjct: 4 gagaagaatctgtaaagctcaggagggatagcgccatg 41
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ttggcgctatccatcctgagtt 113
||||||||||||||||||||||
Sbjct: 66 ttggcgctatccatcctgagtt 87
>46995_ath-miR390a:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccatg 56
|||||| | |||||||||||||||||||||||||||||
Sbjct: 4 gagaagaatctgtaaagctcaggagggatagcgccatg 41
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ttggcgctatccatcctgagtt 113
||||||||||||||||||||||
Sbjct: 66 ttggcgctatccatcctgagtt 87
>48371_bna-miR390b:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccat 55
|||||| | ||||||||||||||||||||||||||||
Sbjct: 4 gagaagaatctgtaaagctcaggagggatagcgccat 40
>54848_vvi-miR390:pmrd
Length = 140
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatg 34
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 9 ctgttaagctcaggagggatagcgccatg 37
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagttctatggcttct 124
|||||||||| |||||||||||||||| ||||
Sbjct: 93 tggcgctatctatcctgagttctatgggttct 124
>51718_ptc-miR390c:pmrd
Length = 123
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatg 34
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagttctat 117
|||||||||| ||||||||||||||
Sbjct: 94 tggcgctatctatcctgagttctat 118
>51716_ptc-miR390a:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatg 34
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagttctatgg 119
|||||||||| ||||||||||||||||
Sbjct: 90 tggcgctatctatcctgagttctatgg 116
>48500_ghr-miR390c:pmrd
Length = 114
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatg 34
>48499_ghr-miR390b:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 13 ctgttaagctcaggagggatagcgccatg 41
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 95 gcgctatccatcctgagttctatggcttcttcttgctt 132
||||||||||||||||||| || | ||||||||||||
Sbjct: 94 gcgctatccatcctgagtttcatcggttcttcttgctt 131
>48498_ghr-miR390a:pmrd
Length = 124
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccatg 38
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgccatg 56
||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatg 24
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ttggcgctatccatcctgagtt 113
||||||||||||||||||||||
Sbjct: 49 ttggcgctatccatcctgagtt 70
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgccat 55
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgccat 55
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
>48575_gma-miR390b:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagc 50
|||||||||||||||||||||||
Sbjct: 6 ctgtaaagctcaggagggatagc 28
>51719_ptc-miR390d:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgcc 53
|||| |||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagtt 113
|||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagtt 97
>51717_ptc-miR390b:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgcc 53
|||| |||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagtt 113
|||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagtt 97
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgcc 53
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgcc 53
|||||||||||||||||||||
Sbjct: 4 aagctcaggagggatagcgcc 24
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagtt 113
|||||||||||||||||||||
Sbjct: 70 tggcgctatccatcctgagtt 90
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgcc 53
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgcc 53
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agctcaggagggatagcgcc 53
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agctcaggagggatagcgcc 53
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
