miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
          (thale cress)
          Length = 136

 Score = 71.2 bits (35), Expect = 3e-12
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 1  ttccacagctttcttgaactttctttttcatttcc 35
          |||||||||||||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactttctttttcatttcc 45




>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
          (papaya)
          Length = 159

 Score = 44.9 bits (22), Expect = 2e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 1  ttccacagctttcttgaactttctttttca 30
          |||||||||||||||||||||  |||||||
Sbjct: 11 ttccacagctttcttgaacttcttttttca 40




>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
          pine)
          Length = 108

 Score = 44.9 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  ttccacagctttcttgaacttt 22
          ||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttt 32




>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
          trichocarpa
          Length = 148

 Score = 42.9 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
          trichocarpa
          Length = 105

 Score = 42.9 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 94 ttccacagctttcttgaactt 74




>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
          trichocarpa
          Length = 157

 Score = 42.9 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
          (castor bean)
          Length = 133

 Score = 42.9 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
          (barrel medic)
          Length = 104

 Score = 42.9 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
          Length = 108

 Score = 42.9 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
          Length = 261

 Score = 42.9 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
          Length = 105

 Score = 42.9 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
          Length = 87

 Score = 42.9 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
          (sorghum)
          Length = 144

 Score = 42.9 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
          Japonica Group
          Length = 142

 Score = 42.9 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31