miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 85.7 bits (43), Expect = 1e-16
Identities = 78/90 (86%), Gaps = 6/90 (6%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacagggtactttcttgcatgcttgagcctttcatgcttg 61
|||||||||||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct: 1 gtgacagaagagagtgagcacacagggtactttcttgcat------gacatccatgcttg 54
Query: 62 aagctctgcgtgctcaccctctatctgtca 91
|| || ||||||||||| ||||||||||||
Sbjct: 55 aaactttgcgtgctcactctctatctgtca 84
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 77.8 bits (39), Expect = 3e-14
Identities = 79/91 (86%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacagggta-ctttcttgcatgcttgagcctttcatgctt 60
|||||||||||||||||||||||| ||| ||||||||||| |||| ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggtttcatgctt 60
Query: 61 gaagctctgcgtgctcaccctctatctgtca 91
|||||| || |||||||| ||||||| ||||
Sbjct: 61 gaagctatgtgtgctcactctctatccgtca 91
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 69.9 bits (35), Expect = 7e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 54 catgcttgaagctctgcgtgctcaccctctatctgtcat 92
||||||||||||||||||||||||| |||||||||||||
Sbjct: 46 catgcttgaagctctgcgtgctcactctctatctgtcat 84
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacagggtactttcttgcatg 42
|||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtactttcctgcatg 41
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 65.9 bits (33), Expect = 1e-10
Identities = 77/90 (85%), Gaps = 5/90 (5%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacagggtactttctt-gcatgcttgagcctttcatgcttg 61
||||||||||||||||||||||| ||| ||||||| |||||| |||| |||||| |
Sbjct: 2 tgacagaagagagtgagcacacacggtgctttcttagcatgcaagagc----catgctgg 57
Query: 62 aagctctgcgtgctcaccctctatctgtca 91
|||| ||||||||||| ||||||||||||
Sbjct: 58 gagctgtgcgtgctcactctctatctgtca 87
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacagggtactttcttgcatgctt 45
|||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtggtttcttgcatgctt 44
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacagggtactttcttgca 40
|||||||||||||||||||||||| ||| ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtgctttcttgca 39
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacagggt-actttcttgcatgct 44
||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgactttcttgcatgct 44
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacagggtactttc 35
|||||||||||||||||||||||| |||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtactttc 34
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 76/89 (85%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacagggtactttcttgcatgcttgagcctttcatgcttg 61
|||||||||||||||||||||||| ||| |||||||||| | || | || ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt--tttcttgcat-atcgatac-ttgatgcttt 56
Query: 62 aagctctgcgtgctcaccctctatctgtc 90
||||||| ||||||||||||||||||||
Sbjct: 57 tagctctgtgtgctcaccctctatctgtc 85
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacagggtactttcttgcatg 42
|||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtgttttctagcatg 41
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacacagggtactttcttgcatg 42
|||| ||||||||||||||||||| ||| |||||||||||
Sbjct: 1 gtgatagaagagagtgagcacacatggtgttttcttgcatg 41
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 50.1 bits (25), Expect = 6e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacagggtac-tttcttgcatg 42
||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgcttttcttgcatg 42
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacag 26
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacag 26
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacag 26
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacag 26
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacag 26
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacacag 26
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 54 catgcttgaagctctgcgtgctcaccctctatctgtcat 92
|||||| |||||||||||||||| | |||| ||||||||
Sbjct: 50 catgctcgaagctctgcgtgctctctctctctctgtcat 88
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 54 catgcttgaagctctgcgtgctcac-cctctatctgtca 91
||||||||||||| ||||||||||| ||||||||||||
Sbjct: 49 catgcttgaagctatgcgtgctcacttctctatctgtca 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcaca 23
||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcaca 22
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacac 24
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacac 24
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacaca 25
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacac 24
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacac 24
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcacac 24
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 gacagaagagagtgagcacaca 25
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgacagaagagagtgagcacac 24
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABEU01000369.1/338030-338109
145481:Physcomitrella patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcaca 23
||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcaca 22
>RF00073;mir-156;ABEU01001319.1/101465-101387
145481:Physcomitrella patens subsp. patens
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 gtgacagaagagagtgagcaca 23
||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcaca 22
