miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41044_ghr-MIR156c:mirbase
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgtcagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgcta 60
Query: 61 gaagctatgtgtgctcaccctctatctgtcatccact 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagctatgtgtgctcaccctctatctgtcatccact 97
>41043_ghr-MIR156b:mirbase
Length = 113
Score = 137 bits (69), Expect = 2e-33
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgcta 60
|||| |||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacacagggtactttcttgcatgcttgagcctttcatgctt 60
Query: 61 gaagctatgtgtgctcaccctctatctgtcatccact 97
|||||| || |||||||||||||||||||||||||||
Sbjct: 61 gaagctctgcgtgctcaccctctatctgtcatccact 97
>41042_ghr-MIR156a:mirbase
Length = 104
Score = 137 bits (69), Expect = 2e-33
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgcta 60
|||| |||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 7 ggtgacagaagagagtgagcacacagggtactttcttgcatgcttgagcctttcatgctt 66
Query: 61 gaagctatgtgtgctcaccctctatctgtcatccact 97
|||||| || |||||||||||||||||||||||||||
Sbjct: 67 gaagctctgcgtgctcaccctctatctgtcatccact 103
>41081_tcc-MIR156b:mirbase
Length = 129
Score = 97.6 bits (49), Expect = 1e-21
Identities = 85/96 (88%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgcta 60
|||| |||||||||||||||||||||||| |||| | ||||||||| ||||||||||
Sbjct: 19 ggtgacagaagagagtgagcacacagggtgctttcttgcatgcttgg--ctttcatgctt 76
Query: 61 gaagctatgtgtgctcaccctctatctgtcatccac 96
|||||| || |||||||| |||||||||||||||||
Sbjct: 77 gaagctctgcgtgctcactctctatctgtcatccac 112
>39795_aly-MIR156f:mirbase
Length = 228
Score = 71.9 bits (36), Expect = 8e-14
Identities = 79/92 (85%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggtt-ctttgtagcatgcttgagcctttcatgct 59
|||| |||||||||||||||||||| ||| |||| | |||| |||| |||||||||
Sbjct: 66 ggtgacagaagagagtgagcacacatggtggctttcttgcatatttgatggtttcatgct 125
Query: 60 agaagctatgtgtgctcaccctctatctgtca 91
|||||||||||||||||| ||||||||||||
Sbjct: 126 tgaagctatgtgtgctcactctctatctgtca 157
>41083_tcc-MIR156d:mirbase
Length = 125
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttcttt 34
|||| |||||||||||||||||||||||||||||
Sbjct: 19 ggtgacagaagagagtgagcacacagggttcttt 52
>40649_mtr-MIR156b:mirbase
Length = 95
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 51 tttcatgctagaagctatgtgtgctcaccctctatctgtca 91
|||||| || |||||||||||||||||| ||||||||||||
Sbjct: 49 tttcattctcgaagctatgtgtgctcactctctatctgtca 89
>40007_ath-MIR156f:mirbase
Length = 132
Score = 56.0 bits (28), Expect = 5e-09
Identities = 77/92 (83%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggtt-ctttgtagcatgcttgagcctttcatgct 59
|||| |||||||||||||||||||| ||| |||| | |||| |||| || ||||||
Sbjct: 19 ggtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggttccatgct 78
Query: 60 agaagctatgtgtgctcaccctctatctgtca 91
|||||||||||||||||| ||||||| ||||
Sbjct: 79 tgaagctatgtgtgctcactctctatccgtca 110
>42679_zma-MIR156b:mirbase
Length = 124
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 53 tcatgctagaagctatgtgtgctcaccctctatctgtca 91
||||||||| |||| || |||||||||||||||||||||
Sbjct: 66 tcatgctaggagctgtgcgtgctcaccctctatctgtca 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacaca 43
>41291_ptc-MIR156d:mirbase
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 71/86 (82%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacagggttctttgtagcatgcttgagcctttcatgctagaagc 65
|||||||||||||||||||||||| |||| | |||| | | |||||||| |||||
Sbjct: 14 cagaagagagtgagcacacagggtactttcttgcat------gacgttcatgcttgaagc 67
Query: 66 tatgtgtgctcaccctctatctgtca 91
| || |||| ||||||||||||||||
Sbjct: 68 tttgcgtgcccaccctctatctgtca 93
>41289_ptc-MIR156b:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttcttt 34
|||| |||||||||||||||||||||||| ||||
Sbjct: 9 ggtgacagaagagagtgagcacacagggtacttt 42
>40006_ath-MIR156e:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 51 tttcatgctagaagctatgtgtgctcaccctctatctgtca 91
||||||||| ||||||||||||||| || |||| |||||||
Sbjct: 62 tttcatgcttgaagctatgtgtgcttactctctctctgtca 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacaca 25
|||| ||||||||||||||||||||
Sbjct: 5 ggtgacagaagagagtgagcacaca 29
>41563_vvi-MIR156c:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 54 catgctagaagctatgtgtgctcaccctctatctgtcatc 93
|||||| |||||| || |||||||| ||||||||||||||
Sbjct: 55 catgcttgaagctctgcgtgctcactctctatctgtcatc 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacaca 25
|||| ||||||||||||||||||||
Sbjct: 9 ggtgacagaagagagtgagcacaca 33
>40330_rco-MIR156a:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 agctatgtgtgctcaccctctatctgtc 90
|||| |||||||||||||||||||||||
Sbjct: 62 agctctgtgtgctcaccctctatctgtc 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacagggtt 30
|||||||||||||||||||| ||||
Sbjct: 9 cagaagagagtgagcacacatggtt 33
>39794_aly-MIR156e:mirbase
Length = 150
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 52 ttcatgctagaagctatgtgtgctcaccctctatctgtca 91
|||||||| ||||||||||||||| || |||| |||||||
Sbjct: 84 ttcatgcttgaagctatgtgtgcttactctctctctgtca 123
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacaca 25
|||| ||||||||||||||||||||
Sbjct: 24 ggtgacagaagagagtgagcacaca 48
>41906_osa-MIR156c:mirbase
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 tcatgctagaagctatgtgtgctcac 78
||||||| ||||||||||||||||||
Sbjct: 80 tcatgcttgaagctatgtgtgctcac 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 32 cagaagagagtgagcacaca 51
>41905_osa-MIR156b:mirbase
Length = 176
Score = 44.1 bits (22), Expect = 2e-05
Identities = 72/87 (82%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacagggttcttt-gtagcatgcttgagcctttcatgctagaag 64
|||||||||||||||||||| ||| |||| |||||||| |||| |||||| | ||
Sbjct: 46 cagaagagagtgagcacacacggtgctttcttagcatgcaagagc----catgctgggag 101
Query: 65 ctatgtgtgctcaccctctatctgtca 91
|| || |||||||| ||||||||||||
Sbjct: 102 ctgtgcgtgctcactctctatctgtca 128
>41727_bdi-MIR156b:mirbase
Length = 205
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacag 26
|||| |||||||||||||||||||||
Sbjct: 29 ggtgacagaagagagtgagcacacag 54
>40332_rco-MIR156c:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacacagggttcttt 34
|||| |||||||||||||||||||| ||| ||||
Sbjct: 4 ggtgacagaagagagtgagcacacatggtacttt 37
>42678_zma-MIR156a:mirbase
Length = 152
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 21 cagaagagagtgagcacacag 41
>42633_tae-MIR156:mirbase
Length = 278
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 99 cagaagagagtgagcacacag 119
>42493_sbi-MIR156i:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 6 cagaagagagtgagcacacag 26
>41910_osa-MIR156g:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 7 cagaagagagtgagcacacag 27
>41909_osa-MIR156f:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 7 cagaagagagtgagcacacag 27
>41881_hvu-MIR156:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacacag 24
>41562_vvi-MIR156b:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacacag 34
>41292_ptc-MIR156e:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacacag 34
>41290_ptc-MIR156c:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacacag 34
>41086_tcc-MIR156g:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacacag 44
>40650_mtr-MIR156c:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacaca 25
|||| ||||||||||||||||||||
Sbjct: 4 ggtgacagaagagagtgagcacaca 28
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 51 tttcatgctagaagctatgtgtgctcaccctctatctgtca 91
|||| |||| |||||||| |||||| || ||||||||||||
Sbjct: 52 tttcctgcttgaagctatatgtgcttactctctatctgtca 92
>40331_rco-MIR156b:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacag 26
|||||||||||||||||||||
Sbjct: 9 cagaagagagtgagcacacag 29
>40008_ath-MIR156g:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacagggttcttt 34
|||||||||||||||||||| || |||||
Sbjct: 14 cagaagagagtgagcacacatggctcttt 42
>42686_zma-MIR156i:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 11 ggtgacagaagagagtgagcacac 34
>42685_zma-MIR156h:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 18 ggtgacagaagagagtgagcacac 41
>42682_zma-MIR156e:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 18 ggtgacagaagagagtgagcacac 41
>42680_zma-MIR156c:mirbase
Length = 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacaca 43
>42487_sbi-MIR156c:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>42486_sbi-MIR156b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>42467_ssp-MIR156:mirbase
Length = 543
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 8 cagaagagagtgagcacaca 27
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 307 cagaagagagtgagcacaca 326
Score = 40.1 bits (20), Expect = 3e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 54 catgctagaagctatgtgtgctcaccctctatctgtcatccact 97
|||||| | |||| || |||||||| |||||||||||| |||||
Sbjct: 350 catgctgggagctgtgcgtgctcactctctatctgtcagccact 393
>42451_sof-MIR156:mirbase
Length = 137
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacaca 43
>41912_osa-MIR156i:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 1 ggtgacagaagagagtgagcacac 24
>41908_osa-MIR156e:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 8 ggtgacagaagagagtgagcacac 31
>41904_osa-MIR156a:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 5 ggtgacagaagagagtgagcacac 28
>41729_bdi-MIR156d:mirbase
Length = 151
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ggtgtcagaagagagtgagcacac 24
|||| |||||||||||||||||||
Sbjct: 29 ggtgacagaagagagtgagcacac 52
>41293_ptc-MIR156f:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>41288_ptc-MIR156a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>40258_bna-MIR156a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>40005_ath-MIR156d:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 21 cagaagagagtgagcacaca 40
>40004_ath-MIR156c:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 15 cagaagagagtgagcacaca 34
>40002_ath-MIR156a:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacaca 43
>39796_aly-MIR156g:mirbase
Length = 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 35 cagaagagagtgagcacaca 54
>39793_aly-MIR156d:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 20 cagaagagagtgagcacaca 39
>39792_aly-MIR156c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>39790_aly-MIR156a:mirbase
Length = 184
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacaca 25
||||||||||||||||||||
Sbjct: 52 cagaagagagtgagcacaca 71
