miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 61.9 bits (31), Expect = 1e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacagggtt-ctttgtagcatgcttgagcctttcatgctagaag 64
|||||||||||||||||||| ||| |||| | |||| |||| ||||||||| ||||
Sbjct: 5 cagaagagagtgagcacacatggtggctttcttgcatatttgaaggtttcatgcttgaag 64
Query: 65 ctatgtgtgctcaccctctatctgtca 91
|||||||||||||| ||||||| ||||
Sbjct: 65 ctatgtgtgctcactctctatccgtca 91
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 51 tttcatgctagaagctatgtgtgctcaccctctatctgtca 91
|||||| || |||||||||||||||||| ||||||||||||
Sbjct: 45 tttcattctcgaagctatgtgtgctcactctctatctgtca 85
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 51 tttcatgctagaagctatgtgtgctcaccctctatctgtca 91
||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 41 tttcatgcttgaagttatatgtgctcaccctctatctgtca 81
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 51 tttcatgctagaagctatgtgtgctcaccctctatctgtca 91
||||||||| ||||||||||||||| || |||| |||||||
Sbjct: 57 tttcatgcttgaagctatgtgtgcttactctctctctgtca 97
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 cagaagagagtgagcacacagggttcttt 34
|||||||||||||||||||||||| ||||
Sbjct: 5 cagaagagagtgagcacacagggtacttt 33
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 agctatgtgtgctcaccctctatctgtc 90
|||| |||||||||||||||||||||||
Sbjct: 58 agctctgtgtgctcaccctctatctgtc 85
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 54 catgctagaagctatgtgtgctcaccctctatctgtcat 92
|||||| |||||| || |||||||| |||||||||||||
Sbjct: 46 catgcttgaagctctgcgtgctcactctctatctgtcat 84
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 52 ttcatgctagaagctatgtgtgctcac 78
|||||||| ||||||||||||||||||
Sbjct: 62 ttcatgcttgaagctatgtgtgctcac 88
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 tcatgctagaagctatgtgtgctcac 78
||||||| ||||||||||||||||||
Sbjct: 53 tcatgcttgaagctatgtgtgctcac 78
