miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41046_ghr-MIR162a:mirbase
Length = 148
Score = 293 bits (148), Expect = 2e-80
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 1 tttttagcgttggggtaaagacactggaggcagcggttcatcgatctcttcctgagaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttttagcgttggggtaaagacactggaggcagcggttcatcgatctcttcctgagaatt 60
Query: 61 ttgttgtgagaataacacaaatacatgaatcgatcgataaacctctgcatccagcgcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttgtgagaataacacaaatacatgaatcgatcgataaacctctgcatccagcgcctt 120
Query: 121 aactctccatgaagttttatgttagtta 148
||||||||||||||||||||||||||||
Sbjct: 121 aactctccatgaagttttatgttagtta 148
>41090_tcc-MIR162:mirbase
Length = 131
Score = 190 bits (96), Expect = 2e-49
Identities = 108/112 (96%)
Strand = Plus / Plus
Query: 16 taaagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataa 75
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 13 taaagacactggaggcagcggttcatcgatctcttcctgggaattttgttgtgagaataa 72
Query: 76 cacaaatacatgaatcgatcgataaacctctgcatccagcgccttaactctc 127
||||||||||||| ||||||||||||||||||||||||| |||||| |||||
Sbjct: 73 cacaaatacatgattcgatcgataaacctctgcatccagagccttacctctc 124
>41220_csi-MIR162:mirbase
Length = 201
Score = 115 bits (58), Expect = 1e-26
Identities = 90/98 (91%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 22 cactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaa-taacacaa 80
||||||||||||||||||||||||| ||| || ||||||||||||| || ||||||||
Sbjct: 87 cactggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaa 146
Query: 81 a-tacatgaatcgatcgataaacctctgcatccagcgc 117
| ||||||||||||||||||||||||||||||||||||
Sbjct: 147 aatacatgaatcgatcgataaacctctgcatccagcgc 184
>40329_cpa-MIR162a:mirbase
Length = 109
Score = 111 bits (56), Expect = 1e-25
Identities = 95/104 (91%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 13 gggtaaagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaa 72
|||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||| ||
Sbjct: 2 gggtaaagtcactggaggcagcggttcatcgatctcttcctgggaa-tttggtgtga-aa 59
Query: 73 taacacaaatacatgaatcgatcgataaacctctgcatccagcg 116
| |||| | ||||||||||||||||||||||||||||||||||
Sbjct: 60 aatcacaga-acatgaatcgatcgataaacctctgcatccagcg 102
>40342_rco-MIR162:mirbase
Length = 101
Score = 91.7 bits (46), Expect = 1e-19
Identities = 87/98 (88%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 22 cactggaggcagcggttcatcgatctcttcctgaga-attttgttgtgagaataacacaa 80
||||||||||||||||||||||||||||||||| | |||||||||||| | || | ||
Sbjct: 2 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 61
Query: 81 ata-catgaatcgatcgataaacctctgcatccagcgc 117
| ||||||||||||||||||||||||||||||||||
Sbjct: 62 aacgcatgaatcgatcgataaacctctgcatccagcgc 99
>41313_ptc-MIR162a:mirbase
Length = 107
Score = 79.8 bits (40), Expect = 5e-16
Identities = 87/101 (86%), Gaps = 5/101 (4%)
Strand = Plus / Plus
Query: 18 aagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataaca 77
||||||||||||||||||||||||||||||||||||| | ||| |||| || ||
Sbjct: 5 aagacactggaggcagcggttcatcgatctcttcctggccaattttttgt----ttagca 60
Query: 78 c-aaatacatgaatcgatcgataaacctctgcatccagcgc 117
| ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 61 cgaaaaacatgaaccgatcgataaacctctgcatccagcgc 101
>41315_ptc-MIR162c:mirbase
Length = 107
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 18 aagacactggaggcagcggttcatcgatctcttcctga 55
|||||||||||||||||||||||||||||| |||||||
Sbjct: 5 aagacactggaggcagcggttcatcgatcttttcctga 42
>41314_ptc-MIR162b:mirbase
Length = 107
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 18 aagacactggaggcagcggttcatcgatctcttcctga 55
|||||||||||||||||||||||||||||| |||||||
Sbjct: 5 aagacactggaggcagcggttcatcgatcttttcctga 42
>40437_gma-MIR162:mirbase
Length = 102
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 84 catgaatcgatcgataaacctctgcatccagcgc 117
||||||||||||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatccagcgc 96
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 22 cactggaggcagcggttcatcgatctcttcctga 55
||||||| ||||||||||||||||||||||||||
Sbjct: 8 cactggatgcagcggttcatcgatctcttcctga 41
>39813_aly-MIR162b:mirbase
Length = 184
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 84 catgaatcgatcgataaacctctgcatccagcgc 117
||||||||||||||||||||||||||||||||||
Sbjct: 103 catgaatcgatcgataaacctctgcatccagcgc 136
>41578_vvi-MIR162:mirbase
Length = 103
Score = 61.9 bits (31), Expect = 1e-10
Identities = 80/95 (84%), Gaps = 6/95 (6%)
Strand = Plus / Plus
Query: 22 cactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaa 81
||||||| |||||||||||||||||||||||||| | ||||||||| || | || |
Sbjct: 7 cactggatgcagcggttcatcgatctcttcctgaaa---ttgttgtgaaaaaagcaga-- 61
Query: 82 tacatgaatcgatcgataaacctctgcatccagcg 116
|| |||||| |||||||||||||||||||||||
Sbjct: 62 -tcaagaatcggtcgataaacctctgcatccagcg 95
>40663_mtr-MIR162:mirbase
Length = 124
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 83 acatgaatcgatcgataaacctctgcatccagcgc 117
|||||||||| ||||||||||||||||||||||||
Sbjct: 76 acatgaatcggtcgataaacctctgcatccagcgc 110
>40025_ath-MIR162b:mirbase
Length = 111
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 87 gaatcgatcgataaacctctgcatccagcgc 117
|||||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccagcgc 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 24 ctggaggcagcggttcatcgatctcttcctgagaat 59
||||||||||||||||||||||| |||||| ||||
Sbjct: 12 ctggaggcagcggttcatcgatcaattcctgtgaat 47
>40024_ath-MIR162a:mirbase
Length = 140
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 24 ctggaggcagcggttcatcgatctcttcctg 54
|||||||||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 84 catgaatcgatcgataaacctctgcatccagcg 116
||||||| |||||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatccagcg 111
>39812_aly-MIR162a:mirbase
Length = 228
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 24 ctggaggcagcggttcatcgatctcttcctg 54
|||||||||||||||||||||||||||||||
Sbjct: 68 ctggaggcagcggttcatcgatctcttcctg 98
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 84 catgaatcgatcgataaacctctgcatccagcg 116
||||||| |||||||||||||||||||||||||
Sbjct: 126 catgaatagatcgataaacctctgcatccagcg 158
>42502_sbi-MIR162:mirbase
Length = 127
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 87 gaatcgatcgataaacctctgcatccag 114
||||||||||||||||||||||||||||
Sbjct: 100 gaatcgatcgataaacctctgcatccag 127
>41929_osa-MIR162a:mirbase
Length = 171
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 87 gaatcgatcgataaacctctgcatccag 114
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>41736_bdi-MIR162:mirbase
Length = 133
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 87 gaatcgatcgataaacctctgcatcc 112
||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatcc 129
>42708_zma-MIR162:mirbase
Length = 130
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 87 gaatcgatcgataaacctctgcatccag 114
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>41930_osa-MIR162b:mirbase
Length = 134
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 87 gaatcgatcgataaacctctgcatccag 114
|||||||||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
>41530_sly-MIR162:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 87 gaatcgatcgataaacctctgcatccag 114
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
