miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48499_ghr-miR390b:pmrd
Length = 132
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 tggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagcttt 63
Query: 61 catgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 catgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggttct 123
Query: 121 tctt 124
||||
Sbjct: 124 tctt 127
>48500_ghr-miR390c:pmrd
Length = 114
Score = 226 bits (114), Expect = 3e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 5 agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 60
Query: 65 catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 114
>54848_vvi-miR390:pmrd
Length = 140
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 5 agaatctgttaagctcaggagggatagcgccatg 38
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 91 gcgctatccatcctgagtttcatcggttcttc 122
|||||||| ||||||||||||| ||||||||
Sbjct: 109 gcgctatctatcctgagtttcacgggttcttc 140
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 5 agaatctgttaagctcaggagggatagcgccatg 38
||||||||||||||||||||||||||||||||||
Sbjct: 4 agaatctgttaagctcaggagggatagcgccatg 37
>51716_ptc-miR390a:pmrd
Length = 119
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 5 agaatctgttaagctcaggagggatagcgccatg 38
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 3 gaagaatctgttaagctcaggagggatagcgccatg 38
||||||||||| ||||||||||||||||||||||||
Sbjct: 6 gaagaatctgtaaagctcaggagggatagcgccatg 41
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 91 gcgctatccatcctgagtttcatcggttcttctt 124
||||||||||||||||||||||| || |||||||
Sbjct: 69 gcgctatccatcctgagtttcattggctcttctt 102
>46995_ath-miR390a:pmrd
Length = 107
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 3 gaagaatctgttaagctcaggagggatagcgccatg 38
||||||||||| ||||||||||||||||||||||||
Sbjct: 6 gaagaatctgtaaagctcaggagggatagcgccatg 41
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 91 gcgctatccatcctgagtttcatcggttcttctt 124
||||||||||||||||||||||| || |||||||
Sbjct: 69 gcgctatccatcctgagtttcattggctcttctt 102
>51719_ptc-miR390d:pmrd
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 5 agaatctgttaagctcaggagggatagcgcc 35
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 gcgctatccatcctgagttt 110
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>51718_ptc-miR390c:pmrd
Length = 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 8 atctgttaagctcaggagggatagcgccatg 38
|||||||||||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccatg 34
>51717_ptc-miR390b:pmrd
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 5 agaatctgttaagctcaggagggatagcgcc 35
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gcgctatccatcctgagtttcat 113
|||||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagtttcat 101
>48371_bna-miR390b:pmrd
Length = 105
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 3 gaagaatctgttaagctcaggagggatagcgccat 37
||||||||||| |||||||||||||||||||||||
Sbjct: 6 gaagaatctgtaaagctcaggagggatagcgccat 40
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 91 gcgctatccatcctgagtttcatcggttcttctt 124
||||| ||||||||||||||||| || |||||||
Sbjct: 67 gcgctgtccatcctgagtttcattggctcttctt 100
>48372_bna-miR390c:pmrd
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgttaagctcaggagggatagcgccatg 38
|||| ||||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccatg 46
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 91 gcgctatccatcctgagtttcatcggttcttctt 124
||||||||||||||||||| ||| | ||||||||
Sbjct: 85 gcgctatccatcctgagttccatggcttcttctt 118
>48370_bna-miR390a:pmrd
Length = 144
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgttaagctcaggagggatagcgccatg 38
|||| ||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccatg 56
>46996_ath-miR390b:pmrd
Length = 120
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatgg 39
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 91 gcgctatccatcctgagtttcatcggttcttctt 124
||||||||||||||||||| ||| | ||||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttcttctt 120
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 gttaagctcaggagggatagcgcc 35
||||||||||||||||||||||||
Sbjct: 1 gttaagctcaggagggatagcgcc 24
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 gcgctatccatcctgagttt 110
||||||||||||||||||||
Sbjct: 72 gcgctatccatcctgagttt 91
>48575_gma-miR390b:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 agaatctgttaagctcaggagggatagc 32
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatg 38
||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatg 24
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 gcgctatccatcctgagttt 110
||||||||||||||||||||
Sbjct: 52 gcgctatccatcctgagttt 71
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccat 37
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccat 37
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 gcgctatccatcctgagttt 110
||||||||||||||||||||
Sbjct: 71 gcgctatccatcctgagttt 90
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgcc 35
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgcc 35
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgcc 35
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 agctcaggagggatagcgcc 35
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 agctcaggagggatagcgcc 35
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
