miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41052_ghr-MIR390b:mirbase
          Length = 132

 Score =  262 bits (132), Expect = 6e-71
 Identities = 132/132 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtatggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagc 60

                                                                       
Query: 61  tttcatgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttcatgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggt 120

                       
Query: 121 tcttcttgcttg 132
           ||||||||||||
Sbjct: 121 tcttcttgcttg 132




>41051_ghr-MIR390a:mirbase
          Length = 124

 Score =  246 bits (124), Expect = 3e-66
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   tggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagcttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagcttt 60

                                                                       
Query: 64  catgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggttct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  catgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggttct 120

               
Query: 124 tctt 127
           ||||
Sbjct: 121 tctt 124




>41053_ghr-MIR390c:mirbase
          Length = 114

 Score =  226 bits (114), Expect = 3e-60
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 60

                                                                 
Query: 68  catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 114




>41130_tcc-MIR390a:mirbase
          Length = 129

 Score = 83.8 bits (42), Expect = 3e-17
 Identities = 49/50 (98%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 81  tgatcctcatatagcgctatccatcctgagtttcatcggttcttcttgct 130
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 76  tgatcctcat-tagcgctatccatcctgagtttcatcggttcttcttgct 124




>41237_csi-MIR390:mirbase
          Length = 154

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 6  gaagaatctgttaagctcaggagggatagcgccatgg 42
          |||||||||||||||||||||||||||||||||||||
Sbjct: 9  gaagaatctgttaagctcaggagggatagcgccatgg 45



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 94  gcgctatccatcctgagtttcatcggttcttctt 127
           ||||||||||||||||||||||| | ||||||||
Sbjct: 98  gcgctatccatcctgagtttcatggcttcttctt 131




>40468_gma-MIR390a:mirbase
          Length = 105

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 8  agaatctgttaagctcaggagggatagcgccatggatgatc 48
          ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagcgccatggatgatc 41



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  gcgctatccatcctgagtttcat 116
           |||||||||||||||||||||||
Sbjct: 67  gcgctatccatcctgagtttcat 89




>40467_gma-MIR390a:mirbase
          Length = 105

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 8  agaatctgttaagctcaggagggatagcgccatggatgatc 48
          ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagcgccatggatgatc 41



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  gcgctatccatcctgagtttcat 116
           |||||||||||||||||||||||
Sbjct: 67  gcgctatccatcctgagtttcat 89




>41640_vvi-MIR390:mirbase
          Length = 140

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 8  agaatctgttaagctcaggagggatagcgccatg 41
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccatg 34



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 94  gcgctatccatcctgagtttcatcggttcttc 125
           |||||||| |||||||||||||  ||||||||
Sbjct: 109 gcgctatctatcctgagtttcacgggttcttc 140




>41413_ptc-MIR390a:mirbase
          Length = 119

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 8  agaatctgttaagctcaggagggatagcgccatg 41
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccatg 34




>41131_tcc-MIR390b:mirbase
          Length = 120

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 1  gtatggaagaatctgttaagctcaggagggatagcgccat 40
          |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 4  gtatgggagaatctgtaaagctcaggagggatagcgccat 43



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 94  gcgctatccatcctgagtttcatcggttcttcttgct 130
           |||||||| |||||||||||||| |||||||| ||||
Sbjct: 79  gcgctatctatcctgagtttcatgggttcttcctgct 115




>40072_ath-MIR390a:mirbase
          Length = 107

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 6  gaagaatctgttaagctcaggagggatagcgccatg 41
          ||||||||||| ||||||||||||||||||||||||
Sbjct: 6  gaagaatctgtaaagctcaggagggatagcgccatg 41



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 94  gcgctatccatcctgagtttcatcggttcttctt 127
           ||||||||||||||||||||||| || |||||||
Sbjct: 69  gcgctatccatcctgagtttcattggctcttctt 102




>39862_aly-MIR390a:mirbase
          Length = 129

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 6  gaagaatctgttaagctcaggagggatagcgccatg 41
          ||||||||||| ||||||||||||||||||||||||
Sbjct: 17 gaagaatctgtaaagctcaggagggatagcgccatg 52



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 94  gcgctatccatcctgagtttcatcggttcttctt 127
           ||||||||||||||||||||||| || |||||||
Sbjct: 80  gcgctatccatcctgagtttcattggctcttctt 113




>41416_ptc-MIR390d:mirbase
          Length = 106

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 8  agaatctgttaagctcaggagggatagcgcc 38
          |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  gcgctatccatcctgagttt 113
           ||||||||||||||||||||
Sbjct: 79  gcgctatccatcctgagttt 98




>41415_ptc-MIR390c:mirbase
          Length = 123

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 11 atctgttaagctcaggagggatagcgccatg 41
          |||||||||||||||||||||||||||||||
Sbjct: 4  atctgttaagctcaggagggatagcgccatg 34




>41414_ptc-MIR390b:mirbase
          Length = 106

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 8  agaatctgttaagctcaggagggatagcgcc 38
          |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  gcgctatccatcctgagtttcat 116
           |||||||||||||||||||||||
Sbjct: 79  gcgctatccatcctgagtttcat 101




>40293_bna-MIR390b:mirbase
          Length = 105

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 6  gaagaatctgttaagctcaggagggatagcgccat 40
          ||||||||||| |||||||||||||||||||||||
Sbjct: 6  gaagaatctgtaaagctcaggagggatagcgccat 40



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 94  gcgctatccatcctgagtttcatcggttcttctt 127
           ||||| ||||||||||||||||| || |||||||
Sbjct: 67  gcgctgtccatcctgagtttcattggctcttctt 100




>40372_rco-MIR390b:mirbase
          Length = 122

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 17 taagctcaggagggatagcgccatggatg 45
          |||||||||||||||||||||||||||||
Sbjct: 5  taagctcaggagggatagcgccatggatg 33



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 90  tatagcgctatccatcctgagtttcat 116
           |||||||||||||||||||||||||||
Sbjct: 92  tatagcgctatccatcctgagtttcat 118




>40705_mtr-MIR390:mirbase
          Length = 100

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 13 ctgttaagctcaggagggatagcgccat 40
          ||||||||||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgccat 28



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  gcgctatccatcctgagtttcat 116
           |||||||||||||||||||||||
Sbjct: 76  gcgctatccatcctgagtttcat 98




>40371_rco-MIR390a:mirbase
          Length = 108

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 ctgttaagctcaggagggatagcgcc 38
          ||||||||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgcc 26



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 94  gcgctatccatcctgagtttca 115
           ||||||||||||||||||||||
Sbjct: 82  gcgctatccatcctgagtttca 103




>40294_bna-MIR390c:mirbase
          Length = 128

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 94  gcgctatccatcctgagtttcatcggttcttcttgctt 131
           ||||||||||||||||||| ||| | ||||||||||||
Sbjct: 85  gcgctatccatcctgagttccatggcttcttcttgctt 122



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 13 ctgttaagctcaggagggatagcgccatg 41
          |||| ||||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccatg 46




>40292_bna-MIR390a:mirbase
          Length = 144

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 13 ctgttaagctcaggagggatagcgccatg 41
          |||| ||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccatg 56



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 94  gcgctatccatcctgagtttcatcggttcttcttgctt 131
           |||||||||||||||||||  || | ||||||||||||
Sbjct: 95  gcgctatccatcctgagttctatggcttcttcttgctt 132




>40073_ath-MIR390b:mirbase
          Length = 120

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 18 aagctcaggagggatagcgccatgg 42
          |||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 94  gcgctatccatcctgagtttcatcggttcttctt 127
           ||||||||||||||||||| ||| | ||||||||
Sbjct: 87  gcgctatccatcctgagttccatagcttcttctt 120




>39863_aly-MIR390b:mirbase
          Length = 127

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 94  gcgctatccatcctgagtttcatcggttcttcttgct 130
           ||||||||||||||||||| ||| | |||||||||||
Sbjct: 91  gcgctatccatcctgagttccatagcttcttcttgct 127



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 18 aagctcaggagggatagcgccatg 41
          ||||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccatg 42




>40469_gma-MIR390b:mirbase
          Length = 103

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 8  agaatctgttaagctcaggagggatagc 35
          ||||||||| ||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagc 28




>39485_ppt-MIR390a:mirbase
          Length = 137

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 18 aagctcaggagggatagcgccat 40
          |||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38




>41996_osa-MIR390:mirbase
          Length = 91

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 1  gtatggaagaatctgttaagctcaggagggatagcgcc 38
          |||||||| ||||  | |||||||||||||||||||||
Sbjct: 2  gtatggaacaatccttgaagctcaggagggatagcgcc 39




>42785_zma-MIR390b:mirbase
          Length = 192

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 aagctcaggagggatagcgcc 38
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22




>42784_zma-MIR390a:mirbase
          Length = 181

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 aagctcaggagggatagcgcc 38
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22




>42565_sbi-MIR390:mirbase
          Length = 179

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 aagctcaggagggatagcgcc 38
          |||||||||||||||||||||
Sbjct: 3  aagctcaggagggatagcgcc 23




>41773_bdi-MIR390b:mirbase
          Length = 186

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 aagctcaggagggatagcgcc 38
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39




>41772_bdi-MIR390:mirbase
          Length = 209

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 aagctcaggagggatagcgcc 38
          |||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51




>39486_ppt-MIR390b:mirbase
          Length = 175

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 aagctcaggagggatagcgcc 38
          |||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48




>39487_ppt-MIR390c:mirbase
          Length = 135

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 19 agctcaggagggatagcgcc 38
          ||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33