miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 262 bits (132), Expect = 6e-71
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 1 gtatggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtatggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagc 60
Query: 61 tttcatgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttcatgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggt 120
Query: 121 tcttcttgcttg 132
||||||||||||
Sbjct: 121 tcttcttgcttg 132
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 4 tggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagcttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaagaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagcttt 60
Query: 64 catgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggttct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catgcatgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggttct 120
Query: 124 tctt 127
||||
Sbjct: 121 tctt 124
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 226 bits (114), Expect = 3e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 8 agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 60
Query: 68 catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 114
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 83.8 bits (42), Expect = 3e-17
Identities = 49/50 (98%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 81 tgatcctcatatagcgctatccatcctgagtttcatcggttcttcttgct 130
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tgatcctcat-tagcgctatccatcctgagtttcatcggttcttcttgct 124
>41237_csi-MIR390:mirbase
Length = 154
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 6 gaagaatctgttaagctcaggagggatagcgccatgg 42
|||||||||||||||||||||||||||||||||||||
Sbjct: 9 gaagaatctgttaagctcaggagggatagcgccatgg 45
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
||||||||||||||||||||||| | ||||||||
Sbjct: 98 gcgctatccatcctgagtttcatggcttcttctt 131
>40468_gma-MIR390a:mirbase
Length = 105
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 8 agaatctgttaagctcaggagggatagcgccatggatgatc 48
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcgccatggatgatc 41
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcat 116
|||||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagtttcat 89
>40467_gma-MIR390a:mirbase
Length = 105
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 8 agaatctgttaagctcaggagggatagcgccatggatgatc 48
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcgccatggatgatc 41
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcat 116
|||||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagtttcat 89
>41640_vvi-MIR390:mirbase
Length = 140
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 8 agaatctgttaagctcaggagggatagcgccatg 41
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttc 125
|||||||| ||||||||||||| ||||||||
Sbjct: 109 gcgctatctatcctgagtttcacgggttcttc 140
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 8 agaatctgttaagctcaggagggatagcgccatg 41
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 gtatggaagaatctgttaagctcaggagggatagcgccat 40
|||||| ||||||||| |||||||||||||||||||||||
Sbjct: 4 gtatgggagaatctgtaaagctcaggagggatagcgccat 43
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttcttgct 130
|||||||| |||||||||||||| |||||||| ||||
Sbjct: 79 gcgctatctatcctgagtttcatgggttcttcctgct 115
>40072_ath-MIR390a:mirbase
Length = 107
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgttaagctcaggagggatagcgccatg 41
||||||||||| ||||||||||||||||||||||||
Sbjct: 6 gaagaatctgtaaagctcaggagggatagcgccatg 41
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
||||||||||||||||||||||| || |||||||
Sbjct: 69 gcgctatccatcctgagtttcattggctcttctt 102
>39862_aly-MIR390a:mirbase
Length = 129
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgttaagctcaggagggatagcgccatg 41
||||||||||| ||||||||||||||||||||||||
Sbjct: 17 gaagaatctgtaaagctcaggagggatagcgccatg 52
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
||||||||||||||||||||||| || |||||||
Sbjct: 80 gcgctatccatcctgagtttcattggctcttctt 113
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 8 agaatctgttaagctcaggagggatagcgcc 38
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagttt 113
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 atctgttaagctcaggagggatagcgccatg 41
|||||||||||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccatg 34
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 8 agaatctgttaagctcaggagggatagcgcc 38
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcat 116
|||||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagtttcat 101
>40293_bna-MIR390b:mirbase
Length = 105
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgttaagctcaggagggatagcgccat 40
||||||||||| |||||||||||||||||||||||
Sbjct: 6 gaagaatctgtaaagctcaggagggatagcgccat 40
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
||||| ||||||||||||||||| || |||||||
Sbjct: 67 gcgctgtccatcctgagtttcattggctcttctt 100
>40372_rco-MIR390b:mirbase
Length = 122
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 17 taagctcaggagggatagcgccatggatg 45
|||||||||||||||||||||||||||||
Sbjct: 5 taagctcaggagggatagcgccatggatg 33
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 90 tatagcgctatccatcctgagtttcat 116
|||||||||||||||||||||||||||
Sbjct: 92 tatagcgctatccatcctgagtttcat 118
>40705_mtr-MIR390:mirbase
Length = 100
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 ctgttaagctcaggagggatagcgccat 40
||||||||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgccat 28
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcat 116
|||||||||||||||||||||||
Sbjct: 76 gcgctatccatcctgagtttcat 98
>40371_rco-MIR390a:mirbase
Length = 108
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 ctgttaagctcaggagggatagcgcc 38
||||||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgcc 26
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttca 115
||||||||||||||||||||||
Sbjct: 82 gcgctatccatcctgagtttca 103
>40294_bna-MIR390c:mirbase
Length = 128
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttcttgctt 131
||||||||||||||||||| ||| | ||||||||||||
Sbjct: 85 gcgctatccatcctgagttccatggcttcttcttgctt 122
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ctgttaagctcaggagggatagcgccatg 41
|||| ||||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccatg 46
>40292_bna-MIR390a:mirbase
Length = 144
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ctgttaagctcaggagggatagcgccatg 41
|||| ||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccatg 56
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttcttgctt 131
||||||||||||||||||| || | ||||||||||||
Sbjct: 95 gcgctatccatcctgagttctatggcttcttcttgctt 132
>40073_ath-MIR390b:mirbase
Length = 120
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccatgg 42
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
||||||||||||||||||| ||| | ||||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttcttctt 120
>39863_aly-MIR390b:mirbase
Length = 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttcttgct 130
||||||||||||||||||| ||| | |||||||||||
Sbjct: 91 gcgctatccatcctgagttccatagcttcttcttgct 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccatg 41
||||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccatg 42
>40469_gma-MIR390b:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 agaatctgttaagctcaggagggatagc 35
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccat 40
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>41996_osa-MIR390:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1 gtatggaagaatctgttaagctcaggagggatagcgcc 38
|||||||| |||| | |||||||||||||||||||||
Sbjct: 2 gtatggaacaatccttgaagctcaggagggatagcgcc 39
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 agctcaggagggatagcgcc 38
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
