miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 4 tggaagaatctgttaagctcaggagggatagcgccatggatgatc 48
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tggaagaatctgtaaagctcaggagggatagcgccatggatgatc 45
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcat 116
|||||||||||||||||||||||
Sbjct: 71 gcgctatccatcctgagtttcat 93
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 73.8 bits (37), Expect = 5e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 6 gaagaatctgttaagctcaggagggatagcgccatgg 42
|||||||||||||||||||||||||||||||||||||
Sbjct: 3 gaagaatctgttaagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttca 115
||||||||||||||||||||||
Sbjct: 66 gcgctatccatcctgagtttca 87
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 69.9 bits (35), Expect = 8e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 4 tggaagaatctgttaagctcaggagggatagcgcc 38
|||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaagaatctgttaagctcaggagggatagcgcc 35
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
|||||||||||||||||||| | ||||||||||
Sbjct: 83 gcgctatccatcctgagttttactggttcttctt 116
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 8 agaatctgttaagctcaggagggatagcgccatg 41
||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 4 tggaagaatctgttaagctcaggagggatagcgccatggatg 45
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 tggaagaatctaataagctcaggagggatagcgccatggatg 42
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 90 tatagcgctatccatcctgagtttcatcggttcttctt 127
||||||||||||||||||||||||||| ||||||||||
Sbjct: 101 tatagcgctatccatcctgagtttcattggttcttctt 138
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 7 aagaatctgttaagctcaggagggatagcgccat 40
||||||||||||||||||||||||||||||||||
Sbjct: 4 aagaatctgttaagctcaggagggatagcgccat 37
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttc 125
||||||||||||||||||||||| | ||||||
Sbjct: 85 gcgctatccatcctgagtttcatggcttcttc 116
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 8 agaatctgttaagctcaggagggatagcgccatg 41
||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
|||||||| ||||||||||||| ||||||||||
Sbjct: 113 gcgctatctatcctgagtttcacgggttcttctt 146
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgttaagctcaggagggatagcgccatg 41
||||||||||| ||||||||||||||||||||||||
Sbjct: 3 gaagaatctgtaaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
|||||||| ||||||||||||| ||||||||||
Sbjct: 100 gcgctatctatcctgagtttcacgggttcttctt 133
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgttaagctcaggagggatagcgccatg 41
||||||||||| ||||||||||||||||||||||||
Sbjct: 3 gaagaatctgtaaagctcaggagggatagcgccatg 38
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
||||||||||||||||||||||| || |||||||
Sbjct: 66 gcgctatccatcctgagtttcattggctcttctt 99
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 agaatctgttaagctcaggagggatagcgcca 39
||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgcca 36
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
||||||||||||||||||||||| ||||||||||
Sbjct: 92 gcgctatccatcctgagtttcattggttcttctt 125
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgttaagctcaggagggatagcgccat 40
||||||||||| |||||||||||||||||||||||
Sbjct: 3 gaagaatctgtaaagctcaggagggatagcgccat 37
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
||||| ||||||||||||||||| || |||||||
Sbjct: 64 gcgctgtccatcctgagtttcattggctcttctt 97
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 atctgttaagctcaggagggatagcgccatg 41
|||||||||||||||||||||||||||||||
Sbjct: 8 atctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 12 tctgttaagctcaggagggatagcgcc 38
|||||||||||||||||||||||||||
Sbjct: 9 tctgttaagctcaggagggatagcgcc 35
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
|||||||||||||||||||||| ||||||||||
Sbjct: 91 gcgctatccatcctgagtttcacaggttcttctt 124
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ctgttaagctcaggagggatagcgccatg 41
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
||||||||||||||||||| ||| | ||||||||
Sbjct: 77 gcgctatccatcctgagttccatggcttcttctt 110
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccatgg 42
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 gcgctatccatcctgagtttcatcggttcttctt 127
||||||||||||||||||| ||| | ||||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttcttctt 120
