miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41053_ghr-MIR390c:mirbase
          Length = 114

 Score =  226 bits (114), Expect = 3e-60
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 60

                                                                 
Query: 61  catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 114




>41052_ghr-MIR390b:mirbase
          Length = 132

 Score =  226 bits (114), Expect = 3e-60
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 67

                                                                 
Query: 61  catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 121




>41051_ghr-MIR390a:mirbase
          Length = 124

 Score =  226 bits (114), Expect = 3e-60
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 64

                                                                 
Query: 61  catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 118




>40468_gma-MIR390a:mirbase
          Length = 105

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 1  agaatctgttaagctcaggagggatagcgccatggatgatc 41
          ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagcgccatggatgatc 41



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  gcgctatccatcctgagtttcat 109
           |||||||||||||||||||||||
Sbjct: 67  gcgctatccatcctgagtttcat 89




>40467_gma-MIR390a:mirbase
          Length = 105

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 1  agaatctgttaagctcaggagggatagcgccatggatgatc 41
          ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagcgccatggatgatc 41



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  gcgctatccatcctgagtttcat 109
           |||||||||||||||||||||||
Sbjct: 67  gcgctatccatcctgagtttcat 89




>41237_csi-MIR390:mirbase
          Length = 154

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 1  agaatctgttaagctcaggagggatagcgccatgg 35
          |||||||||||||||||||||||||||||||||||
Sbjct: 11 agaatctgttaagctcaggagggatagcgccatgg 45



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  gcgctatccatcctgagtttcat 109
           |||||||||||||||||||||||
Sbjct: 98  gcgctatccatcctgagtttcat 120




>41640_vvi-MIR390:mirbase
          Length = 140

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 1  agaatctgttaagctcaggagggatagcgccatg 34
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccatg 34




>41413_ptc-MIR390a:mirbase
          Length = 119

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 1  agaatctgttaagctcaggagggatagcgccatg 34
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccatg 34




>41130_tcc-MIR390a:mirbase
          Length = 129

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 40/41 (97%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                    
Query: 74  tgatcctcatatagcgctatccatcctgagtttcatcggtt 114
           |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 76  tgatcctcat-tagcgctatccatcctgagtttcatcggtt 115



 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 6  ctgttaagctcaggagggatagcgccatggatgatc 41
          |||||||||||||||||||||||||||| |||||||
Sbjct: 16 ctgttaagctcaggagggatagcgccattgatgatc 51




>41416_ptc-MIR390d:mirbase
          Length = 106

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 1  agaatctgttaagctcaggagggatagcgcc 31
          |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  gcgctatccatcctgagttt 106
           ||||||||||||||||||||
Sbjct: 79  gcgctatccatcctgagttt 98




>41415_ptc-MIR390c:mirbase
          Length = 123

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 4  atctgttaagctcaggagggatagcgccatg 34
          |||||||||||||||||||||||||||||||
Sbjct: 4  atctgttaagctcaggagggatagcgccatg 34




>41414_ptc-MIR390b:mirbase
          Length = 106

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 1  agaatctgttaagctcaggagggatagcgcc 31
          |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  gcgctatccatcctgagtttcat 109
           |||||||||||||||||||||||
Sbjct: 79  gcgctatccatcctgagtttcat 101




>40072_ath-MIR390a:mirbase
          Length = 107

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 1  agaatctgttaagctcaggagggatagcgccatg 34
          ||||||||| ||||||||||||||||||||||||
Sbjct: 8  agaatctgtaaagctcaggagggatagcgccatg 41



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  gcgctatccatcctgagtttcat 109
           |||||||||||||||||||||||
Sbjct: 69  gcgctatccatcctgagtttcat 91




>39862_aly-MIR390a:mirbase
          Length = 129

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 1  agaatctgttaagctcaggagggatagcgccatg 34
          ||||||||| ||||||||||||||||||||||||
Sbjct: 19 agaatctgtaaagctcaggagggatagcgccatg 52



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  gcgctatccatcctgagtttcat 109
           |||||||||||||||||||||||
Sbjct: 80  gcgctatccatcctgagtttcat 102




>41131_tcc-MIR390b:mirbase
          Length = 120

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 1  agaatctgttaagctcaggagggatagcgccat 33
          ||||||||| |||||||||||||||||||||||
Sbjct: 11 agaatctgtaaagctcaggagggatagcgccat 43



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 87  gcgctatccatcctgagtttcatcggtt 114
           |||||||| |||||||||||||| ||||
Sbjct: 79  gcgctatctatcctgagtttcatgggtt 106




>40372_rco-MIR390b:mirbase
          Length = 122

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 10 taagctcaggagggatagcgccatggatg 38
          |||||||||||||||||||||||||||||
Sbjct: 5  taagctcaggagggatagcgccatggatg 33



 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 83  tatagcgctatccatcctgagtttcat 109
           |||||||||||||||||||||||||||
Sbjct: 92  tatagcgctatccatcctgagtttcat 118




>40293_bna-MIR390b:mirbase
          Length = 105

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 1  agaatctgttaagctcaggagggatagcgccat 33
          ||||||||| |||||||||||||||||||||||
Sbjct: 8  agaatctgtaaagctcaggagggatagcgccat 40




>40705_mtr-MIR390:mirbase
          Length = 100

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 6  ctgttaagctcaggagggatagcgccat 33
          ||||||||||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgccat 28



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  gcgctatccatcctgagtttcat 109
           |||||||||||||||||||||||
Sbjct: 76  gcgctatccatcctgagtttcat 98




>40371_rco-MIR390a:mirbase
          Length = 108

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 6  ctgttaagctcaggagggatagcgcc 31
          ||||||||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgcc 26



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcgctatccatcctgagtttca 108
           ||||||||||||||||||||||
Sbjct: 82  gcgctatccatcctgagtttca 103




>40294_bna-MIR390c:mirbase
          Length = 128

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 6  ctgttaagctcaggagggatagcgccatg 34
          |||| ||||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccatg 46




>40292_bna-MIR390a:mirbase
          Length = 144

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 6  ctgttaagctcaggagggatagcgccatg 34
          |||| ||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccatg 56




>40073_ath-MIR390b:mirbase
          Length = 120

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 11 aagctcaggagggatagcgccatgg 35
          |||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39




>40469_gma-MIR390b:mirbase
          Length = 103

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  agaatctgttaagctcaggagggatagc 28
          ||||||||| ||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagc 28




>39863_aly-MIR390b:mirbase
          Length = 127

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 aagctcaggagggatagcgccatg 34
          ||||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccatg 42




>39485_ppt-MIR390a:mirbase
          Length = 137

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 aagctcaggagggatagcgccat 33
          |||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38




>42785_zma-MIR390b:mirbase
          Length = 192

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 aagctcaggagggatagcgcc 31
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22




>42784_zma-MIR390a:mirbase
          Length = 181

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 aagctcaggagggatagcgcc 31
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22




>42565_sbi-MIR390:mirbase
          Length = 179

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 aagctcaggagggatagcgcc 31
          |||||||||||||||||||||
Sbjct: 3  aagctcaggagggatagcgcc 23




>41996_osa-MIR390:mirbase
          Length = 91

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 aagctcaggagggatagcgcc 31
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39




>41773_bdi-MIR390b:mirbase
          Length = 186

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 aagctcaggagggatagcgcc 31
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39




>41772_bdi-MIR390:mirbase
          Length = 209

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 aagctcaggagggatagcgcc 31
          |||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51




>39486_ppt-MIR390b:mirbase
          Length = 175

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 aagctcaggagggatagcgcc 31
          |||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48




>39487_ppt-MIR390c:mirbase
          Length = 135

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 agctcaggagggatagcgcc 31
          ||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33