miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48499_ghr-miR390b:pmrd
Length = 132
Score = 226 bits (114), Expect = 3e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 67
Query: 61 catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 121
>48498_ghr-miR390a:pmrd
Length = 124
Score = 226 bits (114), Expect = 3e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatggatgatccatctttcaagctttcatg 64
Query: 61 catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 catgtatgttatttgatcctcatatagcgctatccatcctgagtttcatcggtt 118
>54848_vvi-miR390:pmrd
Length = 140
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatg 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatg 34
||||||||||||||||||||||||||||||||||
Sbjct: 4 agaatctgttaagctcaggagggatagcgccatg 37
>51716_ptc-miR390a:pmrd
Length = 119
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatg 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>51719_ptc-miR390d:pmrd
Length = 106
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgcc 31
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagttt 106
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>51718_ptc-miR390c:pmrd
Length = 123
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 atctgttaagctcaggagggatagcgccatg 34
|||||||||||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccatg 34
>51717_ptc-miR390b:pmrd
Length = 106
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgcc 31
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagtttcat 109
|||||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagtttcat 101
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatg 34
||||||||| ||||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagcgccatg 41
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagtttcat 109
|||||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagtttcat 91
>46995_ath-miR390a:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccatg 34
||||||||| ||||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagcgccatg 41
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagtttcat 109
|||||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagtttcat 91
>48371_bna-miR390b:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagcgccat 33
||||||||| |||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagcgccat 40
>48372_bna-miR390c:pmrd
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ctgttaagctcaggagggatagcgccatg 34
|||| ||||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccatg 46
>48370_bna-miR390a:pmrd
Length = 144
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ctgttaagctcaggagggatagcgccatg 34
|||| ||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccatg 56
>46996_ath-miR390b:pmrd
Length = 120
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccatgg 35
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gttaagctcaggagggatagcgcc 31
||||||||||||||||||||||||
Sbjct: 1 gttaagctcaggagggatagcgcc 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagttt 106
||||||||||||||||||||
Sbjct: 72 gcgctatccatcctgagttt 91
>48575_gma-miR390b:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agaatctgttaagctcaggagggatagc 28
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccatg 34
||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatg 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagttt 106
||||||||||||||||||||
Sbjct: 52 gcgctatccatcctgagttt 71
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccat 33
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccat 33
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagttt 106
||||||||||||||||||||
Sbjct: 71 gcgctatccatcctgagttt 90
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 agctcaggagggatagcgcc 31
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 agctcaggagggatagcgcc 31
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
