miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AP006112.1/24509-24640 34305:Lotus japonicus
          Length = 132

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 45  cttgtgttctcaggtcacccctt 67
           |||||||||||||||||||||||
Sbjct: 100 cttgtgttctcaggtcacccctt 122




>RF00695;MIR398;AC232704.1/64360-64470 4081:Solanum lycopersicum
          Length = 111

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 45  cttgtgttctcaggtcacccctt 67
           |||||||||||||||||||||||
Sbjct: 79  cttgtgttctcaggtcacccctt 101




>RF00695;MIR398;ABIM01000776.1/2623-2725 3649:Carica papaya
          (papaya)
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 46 ttgtgttctcaggtcacccctt 67
          ||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctt 93




>RF00695;MIR398;EU549614.1/303-407 3702:Arabidopsis thaliana
          (thale cress)
          Length = 105

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 46 ttgtgttctcaggtcacccctt 67
          ||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctt 95




>RF00695;MIR398;CR962131.2/106004-106111 3880:Medicago truncatula
          (barrel medic)
          Length = 108

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 46 ttgtgttctcaggtcacccctt 67
          ||||||||||||||||||||||
Sbjct: 77 ttgtgttctcaggtcacccctt 98




>RF00695;MIR398;AM470404.1/7821-7717 29760:Vitis vinifera
          Length = 105

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 46 ttgtgttctcaggtcacccctt 67
          ||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctt 95




>RF00695;MIR398;AARH01004353.1/90880-90989 3694:Populus trichocarpa
          Length = 110

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 47  tgtgttctcaggtcacccctt 67
           |||||||||||||||||||||
Sbjct: 80  tgtgttctcaggtcacccctt 100




>RF00695;MIR398;AASG02002548.1/28926-28824 3988:Ricinus communis
          (castor bean)
          Length = 103

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 47 tgtgttctcaggtcacccctt 67
          |||||||||||||||||||||
Sbjct: 73 tgtgttctcaggtcacccctt 93




>RF00695;MIR398;EU869094.1/300-186 39946:Oryza sativa Indica Group
          Length = 115

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 47  tgtgttctcaggtcacccctt 67
           |||||||||||||||||||||
Sbjct: 85  tgtgttctcaggtcacccctt 105