miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
(castor bean)
Length = 151
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 111 tctcctcggaccaggcttcattccc 135
|||||||||||||||||||||||||
Sbjct: 121 tctcctcggaccaggcttcattccc 145
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tcctcggaccaggcttcattccc 135
|||||||||||||||||||||||
Sbjct: 60 tcctcggaccaggcttcattccc 82
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tcctcggaccaggcttcattccc 135
|||||||||||||||||||||||
Sbjct: 66 tcctcggaccaggcttcattccc 88
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tcctcggaccaggcttcattccc 135
|||||||||||||||||||||||
Sbjct: 77 tcctcggaccaggcttcattccc 99
>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
Indica Group
Length = 141
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 114 cctcggaccaggcttcattccct 136
|||||||||||||||||||||||
Sbjct: 114 cctcggaccaggcttcattccct 136
>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
Japonica Group
Length = 142
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 114 cctcggaccaggcttcattccct 136
|||||||||||||||||||||||
Sbjct: 115 cctcggaccaggcttcattccct 137
>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 ctcggaccaggcttcattccct 136
||||||||||||||||||||||
Sbjct: 77 ctcggaccaggcttcattccct 98
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 cctcggaccaggcttcattccc 135
||||||||||||||||||||||
Sbjct: 123 cctcggaccaggcttcattccc 144
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 cctcggaccaggcttcattccc 135
||||||||||||||||||||||
Sbjct: 87 cctcggaccaggcttcattccc 108
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 cctcggaccaggcttcattccc 135
||||||||||||||||||||||
Sbjct: 47 cctcggaccaggcttcattccc 68
