miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 107 bits (54), Expect = 3e-23
Identities = 91/102 (89%), Gaps = 6/102 (5%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctacctttggttagagagctcaag--agtgctaa 70
||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctatctttggttagaga----aagaaaggactaa 61
Query: 71 ccctgactaggtcatgctgtgacagcctcactccttcctatt 112
|||| ||||||||||||||||||||||||||||||||||||
Sbjct: 62 ccctagctaggtcatgctgtgacagcctcactccttcctatt 103
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 87.7 bits (44), Expect = 3e-17
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 65 tgctaaccctgactaggtcatgctgtgacagcctcactccttcctatt 112
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 75 tgctaaccctgactaggtcatgctgcgacagcctcactccttcctatt 122
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctacctttggttagaga 55
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctagctttggttagaga 48
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 75.8 bits (38), Expect = 1e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 63 agtgctaaccctgactaggtcatgctgtgacagcctcactccttcctatt 112
|||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 94 agtgctaaccctagctaggtcatgctctgacagcctcactccttcctatt 143
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctacctttggttag 52
|||||| |||||||||||||||||||||| ||||||||||
Sbjct: 6 ggaaaaggtgaagctgccagcatgatctagctttggttag 45
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 73.8 bits (37), Expect = 5e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 68 taaccctgactaggtcatgctgtgacagcctcactccttcctatt 112
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 290 taaccctgactaggtcatgctgtgctagcctcactccttcctatt 334
Score = 69.9 bits (35), Expect = 7e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 9 caaaggaaaaagtgaagctgccagcatgatctacctttggtta 51
||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2 caaaggaaaaagtgaagctgccagcatgatctaggtttggtta 44
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 71.9 bits (36), Expect = 2e-12
Identities = 90/107 (84%), Gaps = 7/107 (6%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctacctttggttagaga--gct-----caagagt 65
|||||| |||||||||||||||||||||| ||||||||||||| | | | | ||
Sbjct: 6 ggaaaaggtgaagctgccagcatgatctatctttggttagagaaggatagaagcgaaaga 65
Query: 66 gctaaccctgactaggtcatgctgtgacagcctcactccttcctatt 112
|||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 66 actaaccctagctaggtcatgctctgacagcctcactccttcctatt 112
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 8 gcaaaggaaaaagtgaagctgccagcatgatcta 41
||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaaaggaaaaagtgaagctgccagcatgatcta 34
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 78 taggtcatgctgtgacagcctcactccttcct 109
||||||||||| ||||||||||||||||||||
Sbjct: 74 taggtcatgctctgacagcctcactccttcct 105
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctacctttggtta 51
|||| |||||||||||||||||||||||| |||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatctatctttggtta 44
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 77 ctaggtcatgctgtgacagcctcactccttcct 109
|||||||||||| ||||||||||||||||||||
Sbjct: 81 ctaggtcatgctctgacagcctcactccttcct 113
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctacctttgg 48
|||| |||||||||||||||||||||||| ||||||
Sbjct: 6 ggaataagtgaagctgccagcatgatctagctttgg 41
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 66 gctaaccctgactaggtcatgctgtgacagcctcactccttcct 109
||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 72 gctaaccctagctaggtcatgccctgacagcctcactccttcct 115
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatctacctttggtt 50
||||||||||||||||||||||| ||||||||
Sbjct: 12 agtgaagctgccagcatgatctagctttggtt 43
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 68 taaccctgactaggtcatgctgtgacagcctcactccttcc 108
||||||| ||||||||||||| |||||||||||| |||||
Sbjct: 95 taaccctagctaggtcatgctgcgacagcctcacttcttcc 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatcta 41
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatcta 41
|||| ||||||||||||||||||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatcta 34
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 78 taggtcatgctgtgacagcctcactccttcct 109
||||||||||| |||||||||||||||||||
Sbjct: 72 taggtcatgctcggacagcctcactccttcct 103
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 gaaaaagtgaagctgccagcatgatcta 41
|||| |||||||||||||||||||||||
Sbjct: 7 gaaagagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatcta 41
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatcta 41
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatcta 41
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatcta 41
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gtgaagctgccagcatgatcta 41
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
