miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 71.9 bits (36), Expect = 6e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 340 ttccatcaggtcatcttgcagcttcaatcactcaat 375
||||||||||||||||||||||||||||||||||||
Sbjct: 117 ttccatcaggtcatcttgcagcttcaatcactcaat 152
Score = 69.9 bits (35), Expect = 2e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 tttgagaggttgaagctgccagcatgatctggtaa 35
|||||||||||||||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggtaa 38
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 69.9 bits (35), Expect = 2e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 tttgagaggttgaagctgccagcatgatctggtaa 35
|||||||||||||||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggtaa 38
Score = 67.9 bits (34), Expect = 1e-10
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 340 ttccatcaggtcatcttgcagcttcaatcactca 373
||||||||||||||||||||||||||||||||||
Sbjct: 398 ttccatcaggtcatcttgcagcttcaatcactca 431
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 69.9 bits (35), Expect = 2e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 tttgagaggttgaagctgccagcatgatctggtaa 35
|||||||||||||||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggtaa 38
Score = 67.9 bits (34), Expect = 1e-10
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 340 ttccatcaggtcatcttgcagcttcaatcactca 373
||||||||||||||||||||||||||||||||||
Sbjct: 399 ttccatcaggtcatcttgcagcttcaatcactca 432
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 65.9 bits (33), Expect = 4e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 tttgagaggttgaagctgccagcatgatctggt 33
|||||||||||||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggt 36
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 344 atcaggtcatcttgcagcttcaatcactca 373
||||||||||||||||||||||||||||||
Sbjct: 321 atcaggtcatcttgcagcttcaatcactca 350
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 63.9 bits (32), Expect = 2e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 340 ttccatcaggtcatcttgcagcttcaatcactcaat 375
||||||||||||||||||||||||||||| ||||||
Sbjct: 306 ttccatcaggtcatcttgcagcttcaatccctcaat 341
Score = 61.9 bits (31), Expect = 6e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 tttgagaggttgaagctgccagcatgatctggtaa 35
|||||||| ||||||||||||||||||||||||||
Sbjct: 4 tttgagagattgaagctgccagcatgatctggtaa 38
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 61.9 bits (31), Expect = 6e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tgagaggttgaagctgccagcatgatctggt 33
|||||||||||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 58.0 bits (29), Expect = 1e-07
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 tgagaggttgaagctgccagcatgatctg 31
|||||||||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 tgagaggttgaagctgccagcatgatctggt 33
||||||| |||||||||||||||||||||||
Sbjct: 6 tgagaggctgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
Length = 116
Score = 52.0 bits (26), Expect = 6e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 tgagaggttgaagctgccagcatgatctgg 32
|||||| |||||||||||||||||||||||
Sbjct: 6 tgagagcttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggtaa 35
|||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaa 38
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggtaa 35
|||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaa 38
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggtaa 35
|||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaa 38
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 48.1 bits (24), Expect = 9e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctgg 32
||||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggt 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggt 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggt 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
