miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
          trichocarpa
          Length = 155

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 1  accggcggtctctaattcgcttggtgcaggtcgggaac 38
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 3  accggcggtctctaattcgcttggtgcaggtcgggaac 40



 Score = 63.9 bits (32), Expect = 9e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 178 gaattggatcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||||||||||
Sbjct: 109 gaattggatcccgccttgcatcaactgaatcg 140




>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
          (castor bean)
          Length = 156

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 1  accggcggtctctaattcgcttggtgcaggtcgggaac 38
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 3  accggcggtctctaattcgcttggtgcaggtcgggaac 40



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 178 gaattggatcccgccttgcatcaactgaatcgaaaaccg 216
           |||||||||||||||||||||||||||||||||| ||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcgaagaccg 148




>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
          (barrel medic)
          Length = 121

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 5  gcggtctctaattcgcttggtgcaggtcgggaacc 39
          |||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaacc 41



 Score = 63.9 bits (32), Expect = 9e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 178 gaattggatcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||||||||||
Sbjct: 75  gaattggatcccgccttgcatcaactgaatcg 106




>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
          Length = 76

 Score = 67.9 bits (34), Expect = 6e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 176 gcgaattggatcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||||||||||||
Sbjct: 28  gcgaattggatcccgccttgcatcaactgaatcg 61




>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
          bittercress)
          Length = 126

 Score = 67.9 bits (34), Expect = 6e-11
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 1  accggcggtctctaattcgcttggtgcaggtcgggaac 38
          ||||||||||||| ||||||||||||||||||||||||
Sbjct: 3  accggcggtctctgattcgcttggtgcaggtcgggaac 40



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 186 tcccgccttgcatcaactgaatc 208
           |||||||||||||||||||||||
Sbjct: 88  tcccgccttgcatcaactgaatc 110




>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
          Length = 179

 Score = 67.9 bits (34), Expect = 6e-11
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 1  accggcggtctctaattcgcttggtgcaggtcgggaac 38
          ||||||||||||| ||||||||||||||||||||||||
Sbjct: 3  accggcggtctctgattcgcttggtgcaggtcgggaac 40



 Score = 67.9 bits (34), Expect = 6e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 176 gcgaattggatcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||||||||||||
Sbjct: 131 gcgaattggatcccgccttgcatcaactgaatcg 164




>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
          Length = 147

 Score = 67.9 bits (34), Expect = 6e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 7  ggtctctaattcgcttggtgcaggtcgggaaccg 40
          ||||||||||||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaaccg 42



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 184 gatcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcg 132




>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
           bittercress)
          Length = 138

 Score = 63.9 bits (32), Expect = 9e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 178 gaattggatcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactgaatcg 122



 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 attcgcttggtgcaggtcgggaac 38
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
          Length = 139

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 180 attggatcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||||||||
Sbjct: 93  attggatcccgccttgcatcaactgaatcg 122



 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 attcgcttggtgcaggtcgggaac 38
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
          Length = 139

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 180 attggatcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||||||||
Sbjct: 93  attggatcccgccttgcatcaactgaatcg 122



 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 attcgcttggtgcaggtcgggaac 38
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
          Length = 126

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 1  accggcggtctctaattcgcttggtgcaggtcgggaac 38
          ||||||||||||  ||||||||||||||||||||||||
Sbjct: 3  accggcggtctcagattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
          Length = 139

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 180 attggatcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||||||||
Sbjct: 94  attggatcccgccttgcatcaactgaatcg 123



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 attcgcttggtgcaggtcgggaacc 39
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
          Length = 137

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 180 attggatcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||||||||
Sbjct: 91  attggatcccgccttgcatcaactgaatcg 120



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 attcgcttggtgcaggtcgggaacc 39
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
          Length = 136

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 1  accggcggtctctaattcgcttggtgcaggtcgggaac 38
          ||||||||||||  ||||||||||||||||||||||||
Sbjct: 3  accggcggtctcggattcgcttggtgcaggtcgggaac 40



 Score = 54.0 bits (27), Expect = 8e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 183 ggatcccgccttgcatcaactgaatcg 209
           |||||||||||||||||||||||||||
Sbjct: 95  ggatcccgccttgcatcaactgaatcg 121




>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
          (thale cress)
          Length = 126

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 1  accggcggtctctaattcgcttggtgcaggtcgggaac 38
          ||||||||||||  ||||||||||||||||||||||||
Sbjct: 3  accggcggtctcggattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
           cress)
          Length = 142

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 180 attggatcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||||||||
Sbjct: 97  attggatcccgccttgcatcaactgaatcg 126



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 attcgcttggtgcaggtcgggaacc 39
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
          Length = 136

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 180 attggatcccgccttgcatcaactgaatcg 209
           ||||| ||||||||||||||||||||||||
Sbjct: 90  attggctcccgccttgcatcaactgaatcg 119



 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 attcgcttggtgcaggtcggga 36
          ||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38




>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
          Length = 126

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 1  accggcggtctctaattcgcttggtgcaggtcgggaac 38
          ||||||||| ||  ||||||||||||||||||||||||
Sbjct: 3  accggcggtttcggattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
           pekinensis
          Length = 137

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 180 attggatcccgccttgcatcaactgaatcg 209
           |||||||||||||||||||||| |||||||
Sbjct: 91  attggatcccgccttgcatcaaatgaatcg 120



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 attcgcttggtgcaggtcgggaacc 39
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
          (barrel medic)
          Length = 112

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 ctctaattcgcttggtgcaggtcgggaacc 39
          |||| |||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
          Length = 109

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 184 gatcccgccttgcatcaactgaatc 208
           |||||||||||||||||||||||||
Sbjct: 69  gatcccgccttgcatcaactgaatc 93



 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 attcgcttggtgcaggtcgggaac 38
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
          Length = 136

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 attcgcttggtgcaggtcgggaac 38
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40



 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 186 tcccgccttgcatcaactgaatcg 209
           ||||||||||||||||||||||||
Sbjct: 98  tcccgccttgcatcaactgaatcg 121




>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
          Length = 131

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 attcgcttggtgcaggtcgggaac 38
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40