miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6H509|SPL4_ORYSJ Squamosa promoter-binding-like protein 4
           OS=Oryza sativa subsp. japonica GN=SPL4 PE=2 SV=1
          Length = 251

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 37/78 (47%), Positives = 46/78 (58%)
 Frame = -3

Query: 362 DGKKRSCRQRLSDHNARRRKPQKEKETVHFNSRSQSSSFYDGQHQISFVSNNVPELVQPE 183
           D KKRSCR+RL DHNARRRKPQ +  + + ++R  SS  +D   QISFV N  P L    
Sbjct: 122 DQKKRSCRRRLYDHNARRRKPQTDVFS-YASARPPSSLLFDDNRQISFVWNKAP-LSHVR 179

Query: 182 PALNSIWETTRNSQHTAG 129
           P   S WE++     T G
Sbjct: 180 PFAISPWESSSEVGTTDG 197

>sp|Q653Z5|SPL11_ORYSJ Squamosa promoter-binding-like protein 11
           OS=Oryza sativa subsp. japonica GN=SPL11 PE=2 SV=1
          Length = 343

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 31/67 (46%), Positives = 39/67 (58%)
 Frame = -3

Query: 362 DGKKRSCRQRLSDHNARRRKPQKEKETVHFNSRSQSSSFYDGQHQISFVSNNVPELVQPE 183
           D +KRSCR+RLSDHNARRRKPQ   +   F S +   S +D + QISF  +N   L    
Sbjct: 121 DQEKRSCRRRLSDHNARRRKPQ--TDVFAFGSGTLPRSLFDDRQQISFAWDNNAPLNHAN 178

Query: 182 PALNSIW 162
              +S W
Sbjct: 179 TTSSSSW 185

>sp|Q5Z818|SPL12_ORYSJ Squamosa promoter-binding-like protein 12
           OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1
          Length = 475

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 27/54 (50%), Positives = 34/54 (62%)
 Frame = -3

Query: 362 DGKKRSCRQRLSDHNARRRKPQKEKETVHFNSRSQSSSFYDGQHQISFVSNNVP 201
           D KK+SCR+RLSDHNARRRKPQ  +E + F S   ++ FYD + Q        P
Sbjct: 234 DQKKKSCRRRLSDHNARRRKPQ--QEAISFGSSRLATMFYDARQQTDIYFGQSP 285

>sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12
           OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1
          Length = 475

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 27/54 (50%), Positives = 34/54 (62%)
 Frame = -3

Query: 362 DGKKRSCRQRLSDHNARRRKPQKEKETVHFNSRSQSSSFYDGQHQISFVSNNVP 201
           D KK+SCR+RLSDHNARRRKPQ  +E + F S   ++ FYD + Q        P
Sbjct: 234 DQKKKSCRRRLSDHNARRRKPQ--QEAISFGSSRLATMFYDARQQTDIYFGQSP 285

>sp|Q9S840|SPL2_ARATH Squamosa promoter-binding-like protein 2
           OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1
          Length = 419

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 30/72 (41%), Positives = 39/72 (54%)
 Frame = -3

Query: 362 DGKKRSCRQRLSDHNARRRKPQKEKETVHFNSRSQSSSFYDGQHQISFVSNNVPELVQPE 183
           D KKRSCR+RLSDHNARRRKP   +              YDG+ Q+ FV N    L+ P 
Sbjct: 223 DEKKRSCRRRLSDHNARRRKPNPGRT-------------YDGKPQVDFVWNRF-ALIHPR 268

Query: 182 PALNSIWETTRN 147
                IW ++++
Sbjct: 269 SEEKFIWPSSKH 280

>sp|A3A2Z8|SPL3_ORYSJ Squamosa promoter-binding-like protein 3
           OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1
          Length = 469

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/54 (50%), Positives = 35/54 (64%)
 Frame = -3

Query: 362 DGKKRSCRQRLSDHNARRRKPQKEKETVHFNSRSQSSSFYDGQHQISFVSNNVP 201
           D KKRSCR+RL DHNARRRKPQ E  ++  +SR  +  + D + Q SF+    P
Sbjct: 236 DQKKRSCRRRLHDHNARRRKPQPEAISLS-SSRLSTLLYGDARQQASFLFGQAP 288

>sp|A2X0Q6|SPL3_ORYSI Squamosa promoter-binding-like protein 3
           OS=Oryza sativa subsp. indica GN=SPL3 PE=2 SV=1
          Length = 469

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/54 (50%), Positives = 35/54 (64%)
 Frame = -3

Query: 362 DGKKRSCRQRLSDHNARRRKPQKEKETVHFNSRSQSSSFYDGQHQISFVSNNVP 201
           D KKRSCR+RL DHNARRRKPQ E  ++  +SR  +  + D + Q SF+    P
Sbjct: 236 DQKKRSCRRRLHDHNARRRKPQPEAISLS-SSRLSTLLYGDARQQASFLFGQAP 288

>sp|Q8S9L0|SPL10_ARATH Squamosa promoter-binding-like protein 10
           OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2
          Length = 396

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
 Frame = -3

Query: 362 DGKKRSCRQRLSDHNARRRKPQ----KEKETVHFNSRSQSSSFYDG 237
           D KKRSCR+RLS HNARRRKPQ       E V F+ R  +S  ++G
Sbjct: 230 DEKKRSCRKRLSHHNARRRKPQGVFPLNSERV-FDRRQHTSMLWNG 274

>sp|Q9FZK0|SPL11_ARATH Squamosa promoter-binding-like protein 11
           OS=Arabidopsis thaliana GN=SPL11 PE=2 SV=2
          Length = 393

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = -3

Query: 362 DGKKRSCRQRLSDHNARRRKPQ 297
           D KKRSCR+RLS HNARRRKPQ
Sbjct: 229 DEKKRSCRKRLSHHNARRRKPQ 250

>sp|Q0J0K1|SPL18_ORYSJ Squamosa promoter-binding-like protein 18
           OS=Oryza sativa subsp. japonica GN=SPL18 PE=2 SV=1
          Length = 472

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 28/75 (37%), Positives = 31/75 (41%)
 Frame = -3

Query: 362 DGKKRSCRQRLSDHNARRRKPQKEKETVHFNSRSQSSSFYDGQHQISFVSNNVPELVQPE 183
           D  KRSCR+RL  HN RRRKPQ +           S SF   Q    F S   P      
Sbjct: 169 DEAKRSCRKRLDGHNRRRRKPQADS--------MSSGSFMTSQQGTRFASFTPPRPEPSW 220

Query: 182 PALNSIWETTRNSQH 138
           P +    ET   S H
Sbjct: 221 PGIIKSEETPYYSHH 235