miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 163 bits (82), Expect = 4e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 ggggaatggtgtctgattcgagaccattcgtcacaagtaaacagtagccttgagaatgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggggaatggtgtctgattcgagaccattcgtcacaagtaaacagtagccttgagaatgat 65
Query: 61 ctcggaccaggcttcattcccc 82
||||||||||||||||||||||
Sbjct: 66 ctcggaccaggcttcattcccc 87
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus
trichocarpa
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 gaatgatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||||||
Sbjct: 59 gaatgatctcggaccaggcttcattcccc 87
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 gaatgatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||||||
Sbjct: 61 gaatgatctcggaccaggcttcattcccc 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ggggaatggtgtctgattcgagaccattcg 30
|||||||| |||||| ||||||||||||||
Sbjct: 6 ggggaatgctgtctggttcgagaccattcg 35
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 gaatgatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||||||
Sbjct: 57 gaatgatctcggaccaggcttcattcccc 85
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 50 ttgagaatgatctcggaccaggcttcattcc 80
|||||| ||||||||||||||||||||||||
Sbjct: 144 ttgagagtgatctcggaccaggcttcattcc 174
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 52 gagaatgatctcggaccaggcttcattcccc 82
|||| ||||||||||||||||||||||||||
Sbjct: 68 gagactgatctcggaccaggcttcattcccc 98
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 tgatctcggaccaggcttcattcccc 82
||||||||||||||||||||||||||
Sbjct: 95 tgatctcggaccaggcttcattcccc 120
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
Length = 324
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 aatgatctcggaccaggcttcattcc 80
||||||||||||||||||||||||||
Sbjct: 292 aatgatctcggaccaggcttcattcc 317
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus
trichocarpa
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 tgatctcggaccaggcttcattcccc 82
||||||||||||||||||||||||||
Sbjct: 64 tgatctcggaccaggcttcattcccc 89
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 tgagaatgatctcggaccaggcttcattcc 80
||||| ||||||||||||||||||||||||
Sbjct: 130 tgagactgatctcggaccaggcttcattcc 159
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 tgatctcggaccaggcttcattcccc 82
||||||||||||||||||||||||||
Sbjct: 67 tgatctcggaccaggcttcattcccc 92
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
(papaya)
Length = 138
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 tgatctcggaccaggcttcattccc 81
|||||||||||||||||||||||||
Sbjct: 108 tgatctcggaccaggcttcattccc 132
>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
(castor bean)
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 gaatgatctcggaccaggcttcattcccc 82
||||||| |||||||||||||||||||||
Sbjct: 60 gaatgatttcggaccaggcttcattcccc 88
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 gaatgatctcggaccaggcttcattcccc 82
||||||| |||||||||||||||||||||
Sbjct: 57 gaatgatttcggaccaggcttcattcccc 85
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||
Sbjct: 90 gatctcggaccaggcttcattcccc 114
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||
Sbjct: 85 gatctcggaccaggcttcattcccc 109
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||
Sbjct: 68 gatctcggaccaggcttcattcccc 92
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||
Sbjct: 95 gatctcggaccaggcttcattcccc 119
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||
Sbjct: 185 gatctcggaccaggcttcattcccc 209
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||
Sbjct: 89 gatctcggaccaggcttcattcccc 113
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||
Sbjct: 162 gatctcggaccaggcttcattcccc 186
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||
Sbjct: 131 gatctcggaccaggcttcattcccc 155
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||
Sbjct: 151 gatctcggaccaggcttcattcccc 175
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||
Sbjct: 150 gatctcggaccaggcttcattcccc 174
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcccc 82
|||||||||||||||||||||||||
Sbjct: 92 gatctcggaccaggcttcattcccc 116
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
Length = 317
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgatctcggaccaggcttcattcc 80
||||||||||||||||||||||||
Sbjct: 287 tgatctcggaccaggcttcattcc 310
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 aatgatctcggaccaggcttcattcccc 82
|||||| |||||||||||||||||||||
Sbjct: 123 aatgatgtcggaccaggcttcattcccc 150
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 atctcggaccaggcttcattcccc 82
||||||||||||||||||||||||
Sbjct: 76 atctcggaccaggcttcattcccc 99
>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgatctcggaccaggcttcattcc 80
||||||||||||||||||||||||
Sbjct: 92 tgatctcggaccaggcttcattcc 115
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcc 80
|||||||||||||||||||||||
Sbjct: 84 gatctcggaccaggcttcattcc 106
>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
(papaya)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 atgatctcggaccaggcttcattcccc 82
||||| |||||||||||||||||||||
Sbjct: 62 atgatttcggaccaggcttcattcccc 88
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 98 tctcggaccaggcttcattcccc 120
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa
subsp. pekinensis
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 60 tctcggaccaggcttcattcccc 82
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 atgatctcggaccaggcttcattcccc 82
||||| |||||||||||||||||||||
Sbjct: 67 atgatgtcggaccaggcttcattcccc 93
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 91 tctcggaccaggcttcattcccc 113
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 84 tctcggaccaggcttcattcccc 106
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 atgatctcggaccaggcttcattcccc 82
||||| |||||||||||||||||||||
Sbjct: 70 atgatgtcggaccaggcttcattcccc 96
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 73 tctcggaccaggcttcattcccc 95
>RF00075;mir-166;AARH01009662.1/134102-134198 3694:Populus
trichocarpa
Length = 97
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 70 tctcggaccaggcttcattcccc 92
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 80 tctcggaccaggcttcattcccc 102
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 130 tctcggaccaggcttcattcccc 152
>RF00075;mir-166;AY664413.1/238586-238494 4577:Zea mays
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 66 tctcggaccaggcttcattcccc 88
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 71 tctcggaccaggcttcattcccc 93
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 60 tctcggaccaggcttcattcccc 82
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattcccc 82
|||||||||||||||||||||||
Sbjct: 60 tctcggaccaggcttcattcccc 82
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 gatctcggaccaggcttcattcc 80
|||||||||||||||||||||||
Sbjct: 106 gatctcggaccaggcttcattcc 128
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus
trichocarpa
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ctcggaccaggcttcattcccc 82
||||||||||||||||||||||
Sbjct: 62 ctcggaccaggcttcattcccc 83
>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
trichocarpa
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgatctcggaccaggcttcattcccc 82
|||| |||||||||||||||||||||
Sbjct: 67 tgatttcggaccaggcttcattcccc 92
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ctcggaccaggcttcattcccc 82
||||||||||||||||||||||
Sbjct: 68 ctcggaccaggcttcattcccc 89
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
(castor bean)
Length = 151
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ctcggaccaggcttcattcccc 82
||||||||||||||||||||||
Sbjct: 125 ctcggaccaggcttcattcccc 146
>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
(barrel medic)
Length = 170
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 atctcggaccaggcttcattcc 80
||||||||||||||||||||||
Sbjct: 142 atctcggaccaggcttcattcc 163
>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tctcggaccaggcttcattccc 81
||||||||||||||||||||||
Sbjct: 76 tctcggaccaggcttcattccc 97
>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgatctcggaccaggcttcattcccc 82
|||| |||||||||||||||||||||
Sbjct: 67 tgatttcggaccaggcttcattcccc 92
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ctcggaccaggcttcattcccc 82
||||||||||||||||||||||
Sbjct: 79 ctcggaccaggcttcattcccc 100
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ctcggaccaggcttcattcccc 82
||||||||||||||||||||||
Sbjct: 124 ctcggaccaggcttcattcccc 145
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ctcggaccaggcttcattcccc 82
||||||||||||||||||||||
Sbjct: 88 ctcggaccaggcttcattcccc 109
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ctcggaccaggcttcattcccc 82
||||||||||||||||||||||
Sbjct: 48 ctcggaccaggcttcattcccc 69
