miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 438 bits (221), Expect = e-122
Identities = 287/320 (89%)
Strand = Plus / Plus
Query: 1 aaaagtgaagctgccagcatgatctaggtttggttatacaatagtagtattgagaaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 aaaagtgaagctgccagcatgatctaggtttggttatacaatagtagtattgagaaggaa 68
Query: 61 ctatatacgnnnnnnnnnnactataccacnnnnnnngattactctctttcacaaaatagg 120
||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 69 ctatatacgttttttttttactataccacaaaaaaagattactctctttcacaaaatagg 128
Query: 121 tattaaagtgccatgatttttgcattactaatgggaaaataaattttggacaccgaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tattaaagtgccatgatttttgcattactaatgggaaaataaattttggacaccgaattt 188
Query: 181 ctcacnnnnnnnnnatatagataggaaataggttttggtggtannnnnnngtggtacagt 240
||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 189 ctcactttttttttatatagataggaaataggttttggtggtatttttttgtggtacagt 248
Query: 241 aaaaaatagccgctatatccatacaagtagtactgctagcataaccctgactaggtcatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaaaaatagccgctatatccatacaagtagtactgctagcataaccctgactaggtcatg 308
Query: 301 ctgtgctagcctcactcctt 320
||||||||||||||||||||
Sbjct: 309 ctgtgctagcctcactcctt 328
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 63.9 bits (32), Expect = 1e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 aaaagtgaagctgccagcatgatctaggtttggtta 36
||||||||||||||||||||||||||| ||||||||
Sbjct: 9 aaaagtgaagctgccagcatgatctagctttggtta 44
Score = 54.0 bits (27), Expect = 1e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 282 taaccctgactaggtcatgctgtgctagcctcactcctt 320
|||||||||||||||||||||| | |||||||||||||
Sbjct: 78 taaccctgactaggtcatgctgcgacagcctcactcctt 116
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 56.0 bits (28), Expect = 3e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 aaaagtgaagctgccagcatgatctaggtttggtta 36
|||||||||||||||||||||||||| ||||||||
Sbjct: 9 aaaagtgaagctgccagcatgatctatctttggtta 44
Score = 46.1 bits (23), Expect = 3e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 282 taaccctgactaggtcatgctgtgctagcctcactcctt 320
||||||| ||||||||||||||| |||||||||||||
Sbjct: 59 taaccctagctaggtcatgctgtgacagcctcactcctt 97
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 56.0 bits (28), Expect = 3e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctaggtttggtta 36
||||||||||||||||||||||| ||||||||
Sbjct: 13 gtgaagctgccagcatgatctagctttggtta 44
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 56.0 bits (28), Expect = 3e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 4 agtgaagctgccagcatgatctaggtttggtt 35
|||||||||||||||||||||||| |||||||
Sbjct: 12 agtgaagctgccagcatgatctagctttggtt 43
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 aaaagtgaagctgccagcatgatctag 27
|||||||||||||||||||||||||||
Sbjct: 9 aaaagtgaagctgccagcatgatctag 35
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 aagtgaagctgccagcatgatctaggtttgg 33
||||||||||||||||||||||||| |||||
Sbjct: 11 aagtgaagctgccagcatgatctagctttgg 41
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 52.0 bits (26), Expect = 5e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 3 aagtgaagctgccagcatgatctaggtttggtta 36
|||||||||||||||||||||||| ||||||||
Sbjct: 11 aagtgaagctgccagcatgatctatctttggtta 44
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 48.1 bits (24), Expect = 8e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 5 gtgaagctgccagcatgatctaggtttggtta 36
|||||||||||||||||||||| ||||||||
Sbjct: 13 gtgaagctgccagcatgatctatctttggtta 44
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 aagtgaagctgccagcatgatcta 26
||||||||||||||||||||||||
Sbjct: 11 aagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 agtgaagctgccagcatgatctag 27
||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctag 35
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 agtgaagctgccagcatgatctag 27
||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 agtgaagctgccagcatgatctag 27
||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 agtgaagctgccagcatgatctag 27
||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctag 35
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 agtgaagctgccagcatgatcta 26
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 agtgaagctgccagcatgatcta 26
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
