miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 464 bits (234), Expect = e-130
Identities = 248/252 (98%), Gaps = 3/252 (1%)
Strand = Plus / Plus
Query: 1 ttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagctgctgggtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagctgctgggtcat 70
Query: 61 ggatcccgttagactactccatgttcatcattcagctcgagatctgaaagaaactactcc 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ggatcccgttagcctactccatgttcatcattcagctcgagatctgaaagaaactactcc 130
Query: 121 aatttatactaatagtatgtgtgtagataggaaaatgatggagtactc---gttgggata 177
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 131 aatttatactaatagtatgtgtgtagataggaaaatgatggagtactcgttgttgggata 190
Query: 178 ggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccctctttggattg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccctctttggattg 250
Query: 238 aagggagctctg 249
||||||||||||
Sbjct: 251 aagggagctctg 262
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 226 ctctttggattgaagggagctctg 249
||||||||||||||||||||||||
Sbjct: 198 ctctttggattgaagggagctctg 221
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 226 ctctttggattgaagggagctctg 249
||||||||||||||||||||||||
Sbjct: 209 ctctttggattgaagggagctctg 232
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 226 ctctttggattgaagggagctctg 249
||||||||||||||||||||||||
Sbjct: 152 ctctttggattgaagggagctctg 175
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 227 tctttggattgaagggagctct 248
||||||||||||||||||||||
Sbjct: 174 tctttggattgaagggagctct 195
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 227 tctttggattgaagggagctct 248
||||||||||||||||||||||
Sbjct: 170 tctttggattgaagggagctct 191
