miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AAAA02016828.1/18978-18860 39946:Oryza sativa Indica
Group
Length = 119
Score = 236 bits (119), Expect = 5e-62
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 aggttcttgttggagaagcagggtacgtgcaaaatgcacaccggttggtcgagctaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggttcttgttggagaagcagggtacgtgcaaaatgcacaccggttggtcgagctaatta 60
Query: 61 acaagctctgacgaccatggtgatcgaatgcacgtgctccccttctccaccatggcctt 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acaagctctgacgaccatggtgatcgaatgcacgtgctccccttctccaccatggcctt 119
>RF00647;MIR164;ABXC01006134.1/23615-23833 4558:Sorghum bicolor
(sorghum)
Length = 219
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatggcctt 119
|||||||||||||||||||||||||||||||
Sbjct: 189 tgcacgtgctccccttctccaccatggcctt 219
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 tcttgttggagaagcagggtacgtgcaaa 33
||||||||||||||||||| |||||||||
Sbjct: 5 tcttgttggagaagcagggcacgtgcaaa 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatgg 115
||||||||||||||||||||| |||||
Sbjct: 56 tgcacgtgctccccttctccaacatgg 82
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tcttgttggagaagcagggtacgtgcaa 32
||||||||||||||||||| ||||||||
Sbjct: 5 tcttgttggagaagcagggcacgtgcaa 32
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya (papaya)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatgg 115
||||||||||||||||||||| |||||
Sbjct: 56 tgcacgtgctccccttctccaacatgg 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 tgttggagaagcagggtacgtgcaaa 33
|||||||||||||||| |||||||||
Sbjct: 8 tgttggagaagcagggcacgtgcaaa 33
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatgg 115
||||||||||||||||||||| |||||
Sbjct: 54 tgcacgtgctccccttctccaacatgg 80
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatgg 115
||||||||||||||||||||| |||||
Sbjct: 82 tgcacgtgctccccttctccaacatgg 108
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggtacgtgcaa 32
|||||||||||||||||| ||||||||
Sbjct: 6 cttgttggagaagcagggcacgtgcaa 32
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatgg 115
||||||||||||||||||||| |||||
Sbjct: 65 tgcacgtgctccccttctccaacatgg 91
>RF00647;MIR164;CAAP02000002.1/260390-260272 29760:Vitis vinifera
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatgg 115
||||||||||||||||||||| |||||
Sbjct: 89 tgcacgtgctccccttctccaacatgg 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggtacgtgca 31
|||||||||||||||||| |||||||
Sbjct: 6 cttgttggagaagcagggcacgtgca 31
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgcacgtgctccccttctccaccatgg 115
||||||||||||||||||||| |||||
Sbjct: 54 tgcacgtgctccccttctccaacatgg 80
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 tgttggagaagcagggtacgtgcaaa 33
|||||||||||||||| |||||||||
Sbjct: 8 tgttggagaagcagggcacgtgcaaa 33
