miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AP008209.1/744073-744201 39947:Oryza sativa
Japonica Group
Length = 129
Score = 256 bits (129), Expect = 7e-68
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 5 tctgggtggaatgttgtctggttcaaggccccttaggatgtgtgatttttgatggtttat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgggtggaatgttgtctggttcaaggccccttaggatgtgtgatttttgatggtttat 60
Query: 65 gcattcatcttgatgcgaacatctatctcggatctttgggttctcgaaccaggcttcatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcattcatcttgatgcgaacatctatctcggatctttgggttctcgaaccaggcttcatt 120
Query: 125 cccctcaga 133
|||||||||
Sbjct: 121 cccctcaga 129
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 101 tgggttctcgaaccaggcttcattcccctcaga 133
|||| ||||| ||||||||||||||||||||||
Sbjct: 89 tgggatctcggaccaggcttcattcccctcaga 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tctgggtggaatgttgtctggttcaagg 32
|||| |||||||||||||||||||||||
Sbjct: 1 tctgagtggaatgttgtctggttcaagg 28
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tctgggtggaatgttgtctggttcaagg 32
|||| |||||||||||||||||||||||
Sbjct: 1 tctgagtggaatgttgtctggttcaagg 28
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctcaga 133
||||| ||||||||||||||||||||||
Sbjct: 87 tctcggaccaggcttcattcccctcaga 114
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tctgggtggaatgttgtctggttcaagg 32
|||| |||||||||||||||||||||||
Sbjct: 1 tctgagtggaatgttgtctggttcaagg 28
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctcag 132
||||| |||||||||||||||||||||
Sbjct: 91 tctcggaccaggcttcattcccctcag 117
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 105 ttctcgaaccaggcttcattcccctca 131
|||||| ||||||||||||||||||||
Sbjct: 72 ttctcggaccaggcttcattcccctca 98
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
(castor bean)
Length = 151
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ggaatgttgtctggttcaaggcc 34
|||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggttcaaggcc 30
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 105 ttctcgaaccaggcttcattcccctca 131
|||||| ||||||||||||||||||||
Sbjct: 129 ttctcggaccaggcttcattcccctca 155
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 gtggaatgttgtctggttcaagg 32
|||||||||||||||||||||||
Sbjct: 4 gtggaatgttgtctggttcaagg 26
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 97 tctcggaccaggcttcattcccctca 122
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 107 ctcgaaccaggcttcattcccctcaga 133
|||| ||||||||||||||||||||||
Sbjct: 88 ctcggaccaggcttcattcccctcaga 114
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 5 tctgggtggaatgttgtctggttcaaggcc 34
|||| ||||||||||||||||||| |||||
Sbjct: 1 tctgtgtggaatgttgtctggttctaggcc 30
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 98 tctcggaccaggcttcattcccctca 123
>RF00075;mir-166;AARH01009662.1/134102-134198 3694:Populus
trichocarpa
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 70 tctcggaccaggcttcattcccctca 95
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 92 tctcggaccaggcttcattcccctca 117
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 70 tctcggaccaggcttcattcccctca 95
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 71 tctcggaccaggcttcattcccctca 96
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 70 tctcggaccaggcttcattcccctca 95
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 60 tctcggaccaggcttcattcccctca 85
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 60 tctcggaccaggcttcattcccctca 85
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 tctcgaaccaggcttcattcccctca 131
||||| ||||||||||||||||||||
Sbjct: 76 tctcggaccaggcttcattcccctca 101
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 107 ctcgaaccaggcttcattcccctcag 132
|||| |||||||||||||||||||||
Sbjct: 48 ctcggaccaggcttcattcccctcag 73
